PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00027.1_g00042.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | WRKY | ||||||||
Protein Properties | Length: 732aa MW: 80550.9 Da PI: 7.535 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 78.5 | 7.6e-25 | 146 | 202 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK+vk+ + +rsYYrCt+++C++kk +e+s++ ++v+ei+++g+H he Rsa1.0_00027.1_g00042.1 146 RDGYHWRKYGQKQVKSPKGSRSYYRCTYSDCCAKK-IECSNDSGNVIEIVNKGSHSHE 202 7********************************98.*********************8 PP | |||||||
2 | WRKY | 96.1 | 2.4e-30 | 309 | 365 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 Dgy+WrKYGqK+vkg+++pr+YYrCtsagC+v+k++e++ ++ ++v+itY+g Hnh+ Rsa1.0_00027.1_g00042.1 309 DGYRWRKYGQKMVKGNPNPRNYYRCTSAGCTVRKHIETAVDNRTAVVITYKGVHNHD 365 9*******************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.7E-19 | 142 | 203 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.23E-19 | 143 | 202 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-22 | 145 | 203 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-16 | 147 | 201 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 15.078 | 147 | 204 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 7.8E-31 | 292 | 367 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.881 | 302 | 367 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.01E-26 | 303 | 367 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.9E-34 | 307 | 366 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-22 | 309 | 365 | IPR003657 | WRKY domain |
Hamap | MF_01363 | 20.53 | 606 | 704 | IPR001787 | Ribosomal protein L21 |
SuperFamily | SSF141091 | 3.14E-27 | 607 | 702 | IPR028909 | Ribosomal protein L21-like |
TIGRFAMs | TIGR00061 | 5.2E-23 | 607 | 703 | IPR001787 | Ribosomal protein L21 |
Pfam | PF00829 | 1.4E-28 | 607 | 702 | IPR028909 | Ribosomal protein L21-like |
PROSITE pattern | PS01169 | 0 | 673 | 695 | IPR018258 | Ribosomal protein L21, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006412 | Biological Process | translation | ||||
GO:0005840 | Cellular Component | ribosome | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0003735 | Molecular Function | structural constituent of ribosome | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 732 aa Download sequence Send to blast |
MEDKGSDEAD VYAATETEKT EKVEPEKELC HGDDDDDELS RRRGEESVTD MEGIQVRETL 60 AKDHDEGARE NSPVEPNRED AKEKASGTES DVGAIVPVET STCLSSNPSA AHGVSLVSVL 120 SKQEQSSGSR VVSNLSVSPV LRTPARDGYH WRKYGQKQVK SPKGSRSYYR CTYSDCCAKK 180 IECSNDSGNV IEIVNKGSHS HEPLRNNSFS PRETRAAAPV ISPVTEDSTG VRSCSALSAS 240 TKENICESSL AVVEGKRNCE NEAMEEPEPK RRQVLLKKSN SQSSDPVFKP GKKQRFVVHA 300 AGDVGISGDG YRWRKYGQKM VKGNPNPRNY YRCTSAGCTV RKHIETAVDN RTAVVITYKG 360 VHNHDMPVPK KRHGPPSSEL VAAVAPTSMR TRSEDQVNIP TSGQCSVRGG SEKQSSEAVD 420 VVGGEKVMES ARTLLSIGRS AEAFNRVDSP NPTTSKTPLT SLGKTLSYTR CSPMASLRCL 480 RELSRRATTA AHSINQTRLF SSFHRLELPG TSSITHGIPS QNRSLARDLP LYCRSQGRHF 540 SSKTNDTDES SDGDDDEEDY EDSGEMEVVE REYSPAEKVE AAAEIGYKVM GPLKPLERLF 600 KPYEPVFAVV QIGSHQFKVS NGDSIFTEKL KFCDINDKVL LLGSASQTII GRPILPDATV 660 HAVVEEHALD EKVLIFKKKR RKNYRRTTGH RQELTKLRIT DIQGIEKPEP KIIHKPSKAA 720 ADTEQSEAKL VA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-24 | 298 | 367 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 2e-24 | 298 | 367 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 676 | 680 | KKKRR |
2 | 676 | 681 | KKKRRK |
3 | 677 | 681 | KKRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00027.1_g00042.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF430049 | 0.0 | KF430049.1 Brassica rapa WRKY transcription factor 32 (WRKY32) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018447922.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 32 | ||||
Swissprot | P59583 | 0.0 | WRK32_ARATH; Probable WRKY transcription factor 32 | ||||
TrEMBL | D7MBK5 | 0.0 | D7MBK5_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pm.C_scaffold_7000852 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6338 | 28 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30935.1 | 0.0 | WRKY DNA-binding protein 32 |