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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00025.1_g00052.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB | ||||||||
Protein Properties | Length: 259aa MW: 29399 Da PI: 8.6534 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.8 | 1e-07 | 28 | 73 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 WT+eE + + +a + ++ + +W Ia++++ g+t ++ + k Rsa1.0_00025.1_g00052.1 28 VWTKEENKMFERALAIYPEDspdRWFNIASMIP-GKTVFDVMKQYSK 73 7********************************.***9999888876 PP | |||||||
2 | Myb_DNA-binding | 38.1 | 3.6e-12 | 124 | 168 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT eE+ +++ + ++G+g+W+ I+r + +t+ q+ s+ qky Rsa1.0_00025.1_g00052.1 124 PWTDEEHRRFLLGLLKYGKGDWRNISRNFVVSKTPTQVASHAQKY 168 7*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.226 | 24 | 77 | IPR017884 | SANT domain |
SMART | SM00717 | 6.8E-9 | 25 | 77 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-4 | 26 | 73 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.01E-12 | 27 | 81 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.7E-6 | 28 | 73 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.96E-8 | 29 | 74 | No hit | No description |
PROSITE profile | PS51294 | 17.547 | 117 | 173 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.5E-15 | 119 | 172 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.2E-17 | 120 | 172 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 7.1E-9 | 121 | 171 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.6E-10 | 122 | 168 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.27E-8 | 124 | 168 | No hit | No description |
Pfam | PF00249 | 2.7E-9 | 124 | 168 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
METLHPLSHV PISDHRLVVQ EMMSSSSVWT KEENKMFERA LAIYPEDSPD RWFNIASMIP 60 GKTVFDVMKQ YSKLEEDVSD IEAGRVPVPG YPSASSPLGF DQDTCRKRPS WGRGSDHDRK 120 KGIPWTDEEH RRFLLGLLKY GKGDWRNISR NFVVSKTPTQ VASHAQKYYL RQLSGAKDKR 180 RPSIHDTTTV NLLNANRNRS FSDHRDILPD LGFVDKDNAE DGLMSMSPNR YSANLFSPSS 240 SPFDDAICFA GANAFRARS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 8e-18 | 29 | 106 | 11 | 88 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00025.1_g00052.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018440196.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Refseq | XP_018440197.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 1e-73 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A078HEX6 | 1e-176 | A0A078HEX6_BRANA; BnaA01g30920D protein | ||||
TrEMBL | A0A3P5ZHP7 | 1e-176 | A0A3P5ZHP7_BRACM; Uncharacterized protein | ||||
STRING | Bra034173.1-P | 1e-172 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4340 | 26 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11280.2 | 1e-158 | MYB family protein |
Publications ? help Back to Top | |||
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