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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Rsa1.0_00025.1_g00043.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
MYB |
| Protein Properties |
Length: 500aa MW: 55307.4 Da PI: 5.5893 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_00025.1_g00043.1 | genome | RGD | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 45.9 | 1.3e-14 | 45 | 92 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT Ed l+d+vk++G g+W+ + ++ + R++k+c++rw ++l
Rsa1.0_00025.1_g00043.1 45 KGPWTSTEDGVLIDYVKRHGEGNWNNVQKHTSLARCGKSCRLRWANHL 92
79******************************************9986 PP
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| 2 | Myb_DNA-binding | 45.5 | 1.8e-14 | 98 | 141 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+g++++eE++ +v+ ++++G++ W+ a+ ++ gRt++++k++w++
Rsa1.0_00025.1_g00043.1 98 KGAFSKEEEQVIVEMHARMGNK-WAQMAELLP-GRTDNEIKNYWNT 141
799*******************.*********.***********96 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 500 aa
Download sequence Send
to blast |
MSYTMDESDD AMYSSIYNNE SPSTADNNGC TSSRGGKGSV LNLKKGPWTS TEDGVLIDYV 60
KRHGEGNWNN VQKHTSLARC GKSCRLRWAN HLRPNLKKGA FSKEEEQVIV EMHARMGNKW 120
AQMAELLPGR TDNEIKNYWN TRIKRRQRAG LPLYPPGTHV EDLHWSQEYQ STGVVDRRRH 180
QEFSQLGNSK ANALFEDLNF ANVLFEDLNF ATSLLPGASD MLACNMLGTG ASSYTPHSNN 240
IRQAFQSPEH FQNAAPQKNP RSFSISDHPM YGGNQNPSDV MMIQDSHTFT DGMLPTSKPS 300
FGAVKLELPS FQYSETGGFD QWKTTTPSPP QSDLLDSVDT YIQSPPPLEI DEPDCFSSCD 360
TGLLDMLLHE AKIKASAKHG LLLSSSEKSI NSNTCATQNV PRVGESEAFQ NIWTRSEIPI 420
PTQLSGGGNS SDSHSVIFEA LAGYVVKTEE LDQVWEPKRG VDVTRPDALL ASSWQDQQGR 480
FGIVRDSSSM SDALALLLGG
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator of alpha-amylase expression that binds to 5'-CAACTGTC-3' motif in target gene promoter (PubMed:11743113). In vegetative tissues, inhibits growth by reducing cell proliferation. Promotes the expression of aleurone-related genes (e.g. CP1, CP, GASA1, BXL1 and BXL2) in seeds. Together with MYB33 and MYB101, promotes the programmed cell death (PCD) the vacuolation of protein storage vacuoles (PSVs) in the aleurone layers during seed germination (PubMed:20699403). Together with MYB33, facilitates anther and tapetum development (PubMed:15722475). {ECO:0000269|PubMed:11743113, ECO:0000269|PubMed:15722475, ECO:0000269|PubMed:20699403}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by microRNA159 (miR159a and miR159b) in vegetative tissues (PubMed:20699403, PubMed:17916625, PubMed:15226253). Specific expression in floral organs and in the shoot apices is regulated via miR159-mediated degradation (PubMed:15722475). Slightly induced by ethylene and salicylic acid (PubMed:16463103). {ECO:0000269|PubMed:15226253, ECO:0000269|PubMed:15722475, ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:17916625, ECO:0000269|PubMed:20699403}. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Allen RS, et al.
Genetic analysis reveals functional redundancy and the major target genes of the Arabidopsis miR159 family.
Proc. Natl. Acad. Sci. U.S.A., 2007. 104(41): p. 16371-6
[PMID:17916625] - Li J,Reichel M,Millar AA
Determinants beyond both complementarity and cleavage govern microR159 efficacy in Arabidopsis.
PLoS Genet., 2014. 10(3): p. e1004232
[PMID:24626050] - Li Y,Alonso-Peral M,Wong G,Wang MB,Millar AA
Ubiquitous miR159 repression of MYB33/65 in Arabidopsis rosettes is robust and is not perturbed by a wide range of stresses.
BMC Plant Biol., 2016. 16(1): p. 179
[PMID:27542984] - Liu B,De Storme N,Geelen D
Gibberellin Induces Diploid Pollen Formation by Interfering with Meiotic Cytokinesis.
Plant Physiol., 2017. 173(1): p. 338-353
[PMID:27621423] - Zheng Z, et al.
Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy.
Plant Physiol., 2017. 174(3): p. 1764-1778
[PMID:28515145] - Xue T,Liu Z,Dai X,Xiang F
Primary root growth in Arabidopsis thaliana is inhibited by the miR159 mediated repression of MYB33, MYB65 and MYB101.
Plant Sci., 2017. 262: p. 182-189
[PMID:28716415] - Kim MH, et al.
Poplar MYB transcription factor PtrMYB012 and its Arabidopsis AtGAMYB orthologs are differentially repressed by the Arabidopsis miR159 family.
Tree Physiol., 2018. 38(6): p. 801-812
[PMID:29301041]
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