PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00022.1_g00016.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 380aa    MW: 42078.3 Da    PI: 7.8874
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00022.1_g00016.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.6e-20181230255
                      AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+W+AeIrd +     + +r++lg+f+ ae Aa+a+++a+++++g
  Rsa1.0_00022.1_g00016.1 181 RYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFDNAESAARAYDEAALRFRG 230
                              7********.**********66.....56*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-13181230IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-32181239IPR001471AP2/ERF domain
PROSITE profilePS5103225.106181238IPR001471AP2/ERF domain
SMARTSM003808.4E-36181244IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-22181239IPR016177DNA-binding domain
PRINTSPR003674.9E-11182193IPR001471AP2/ERF domain
CDDcd000181.32E-26189240No hitNo description
PRINTSPR003674.9E-11204220IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MCTLKVANQE DKVGKKAEFT TREDDHRTLS DIDQWFYLFP AEDNHLHHRD NALTPPSSSS  60
LMSSSDREKE MSAIVSALTH VVAGNVPPHQ FVGGGEATSN SSSSSGHKRR REVEEGGSGG  120
KAVKGVNTLT VDQYFSGGNS SSRVREASSN MSGSGPTYEY TTTMNTNTET SSLNADQPRR  180
RYRGVRQRPW GKWAAEIRDP FKAARVWLGT FDNAESAARA YDEAALRFRG NKAKLNFPEN  240
VKLVRPLAAT QSLPQPAPVQ TITQLRNSSS TSTLLPIRPA VDSQPLMQSY NLSYSEMARD  300
HQQFQQHFHQ QSMDLYDQMS FPLRFGLTGD SMMQSTSSSS SHSRPLFSPL AVQPGETGYL  360
QDIQWSPEKK TSNDDNSPSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-22180241163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of the abscisic acid (ABA) signaling pathway involved in seed germination and in responses to stress conditions. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16227468}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00022.1_g00016.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and stresses, including cold, drought and salt (PubMed:16227468, PubMed:26961720). Triggered by YY1 (PubMed:26961720). {ECO:0000269|PubMed:16227468, ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1667410.0AC166741.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH080C09, complete sequence.
GenBankAC1892070.0AC189207.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB007I19, complete sequence.
GenBankAC2347560.0AC234756.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH067G23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438486.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like
SwissprotQ9FGF81e-146ABR1_ARATH; Ethylene-responsive transcription factor ABR1
TrEMBLA0A3P6DW410.0A0A3P6DW41_BRAOL; Uncharacterized protein
STRINGBra031903.1-P1e-177(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91182137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.11e-125ERF family protein
Publications ? help Back to Top
  1. Choi DS,Hwang BK
    Proteomics and functional analyses of pepper abscisic acid-responsive 1 (ABR1), which is involved in cell death and defense signaling.
    Plant Cell, 2011. 23(2): p. 823-42
    [PMID:21335377]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  4. Sanyal SK, et al.
    Arabidopsis CBL interacting protein kinase 3 interacts with ABR1, an APETALA2 domain transcription factor, to regulate ABA responses.
    Plant Sci., 2017. 254: p. 48-59
    [PMID:27964784]
  5. Choi SW,Lee SB,Na YJ,Jeung SG,Kim SY
    Arabidopsis MAP3K16 and Other Salt-Inducible MAP3Ks Regulate ABA Response Redundantly.
    Mol. Cells, 2017. 40(3): p. 230-242
    [PMID:28292003]