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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00020.1_g00053.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
NAC |
Protein Properties |
Length: 391aa MW: 45530.2 Da PI: 5.8894 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00020.1_g00053.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 178.6 | 1.7e-55 | 7 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyW 83
+ppGfrFhPtdeelv++yL+kkv++k++e+ ++ik++d+yk+ePwdL++ k+ +ee+ +wyfFs++dkky+tg+r+nratk+g+W
Rsa1.0_00020.1_g00053.1 7 VPPGFRFHPTDEELVDYYLRKKVASKRIEI-DFIKDIDLYKIEPWDLQElcKIGHEEQsDWYFFSHKDKKYPTGTRTNRATKAGFW 91
69****************************.99**************9544444444359************************** PP
NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
katg+dk+++ +++l+g++ktLvfykgrap+g+k+dW+mheyrle
Rsa1.0_00020.1_g00053.1 92 KATGRDKAIYL-RHNLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136
***********.899*****************************85 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 391 aa
Download sequence Send
to blast |
MNSFSHVPPG FRFHPTDEEL VDYYLRKKVA SKRIEIDFIK DIDLYKIEPW DLQELCKIGH 60 EEQSDWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YLRHNLIGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETDEN GTPHEEGWVV CRVFKKRLAA VRRMGDYDSS PSHWYDDQLS 180 FMSSELETNG PRRILPNHQH QHQHQYHLPY GFSASAYALN SPNLLCKQEL QYNHLVQNHH 240 LLHEPPLSFL QLPQLEIPIQ SQDNSNSNYF PYETSNNDTN SSHIANLQQS NLAHEEQLNQ 300 GNQVFSSPYI NSGNEQTMDQ VTDWRVLDKF VASQLSNEEA ATASASLQNN AKDTSNLEYQ 360 VDEEKEEERV SDMGEEYDAS TSSSCQIDLW K
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KM975667 | 0.0 | KM975667.1 Brassica napus NAC transcription factor 7.1 (NAC7.1) mRNA, complete cds. |