PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00018.1_g00016.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 395aa    MW: 45403.8 Da    PI: 7.1389
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00018.1_g00016.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix86.72.8e-2775156286
                 trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                              W ++e++ Li +rr m+  ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k+ykk k++++++   +s +++y++++e
  Rsa1.0_00018.1_g00016.1  75 WVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEYKKAKHQDRGN---VSAKMSYYKEIE 156
                              ********************************************************************85...77889****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.0E-465137IPR009057Homeodomain-like
PROSITE profilePS500907.88667131IPR017877Myb-like domain
SMARTSM007170.009671133IPR001005SANT/Myb domain
CDDcd122034.55E-3073138No hitNo description
PfamPF138372.1E-2074157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MFVSDKPRPN EFYKDDTTNS STTARNMIID GDLQPHNHHH HNHHHLQPQQ ILLLGESSGG  60
EDHEVKPPKK RAETWVQDET RSLIMFRRGM DGLFNTSKSN KHLWEQISAK MREKGFDRSP  120
TMCTDKWRNL LKEYKKAKHQ DRGNVSAKMS YYKEIEDILR ERSKKVTQYS KSPTNTPIAK  180
VDSFMQFTDK GFDDPSIPFG SVVEANGRPA LNLERSLDHD GHPLAITAVD AVPANGVPPW  240
NWRETPGNGG DAHGQQPFGG RVITVKLGDY TRRIGVDGTA EAIKETIRSA FRLRTRRAFW  300
LEDEDQVVRC LDRDMPLGNY LLHVDDGLAI RVCHYDDSNQ LPVHTEEKIF YTEEDYRDFL  360
ARRGWTCLQG DGFRNIDNMD DLQPGAVYRG VRERM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A5e-5369154186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00018.1_g00016.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018482120.10.0PREDICTED: trihelix transcription factor GT-1-like
SwissprotQ9FX530.0TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A0D3C9T70.0A0A0D3C9T7_BRAOL; Uncharacterized protein
STRINGBo5g017510.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28912768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.10.0Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]