PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00017.1_g00033.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 530aa    MW: 59543.3 Da    PI: 5.529
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00017.1_g00033.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.75.9e-15221011298
                              HTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                       B3  12 ksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                              ++++ ++p +f+++h + k++s++l+l++  s rsWev+l  ++++    +++GWk+F   +g++  D++ F++dg++ f  +v+ 
  Rsa1.0_00017.1_g00033.1  22 QNSIPMIPDSFISNHVKGKTQSTKLKLTTdVSDRSWEVEL--DGQR----FARGWKQFSVHHGVRNDDVLSFRHDGDMVF--HVTP 99 
                              556679*********666789999999887999*******..8888....9************************99999..7776 PP

                              E- CS
                       B3  97 fr 98 
                              f 
  Rsa1.0_00017.1_g00033.1 100 FG 101
                              65 PP
2B367.12.6e-21180272599
                              -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                       B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                               ++s++l+++ l+l+++fa+++g+++ ++ ++ l +e+g+sW++ l+++k+ g+ ++ +GW +F++ ng+k+g ++ Fk+++  ++
  Rsa1.0_00017.1_g00033.1 180 HVTSSTLSRSHLCLSNNFARSNGLNN-RHCEIDLLNEDGKSWTLDLRHNKTTGQAYMCRGWTSFCQGNGIKTGSSCRFKFVQ-GGT 263
                              57899999999***********9996.567************************99999********************998.889 PP

                              ..EEEEE-S CS
                       B3  91 elvvkvfrk 99 
                              ++v++++ +
  Rsa1.0_00017.1_g00033.1 264 KPVIQLCPN 272
                              99**99975 PP
3B341.82e-13308399599
                              -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SSSE CS
                       B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgrse 89 
                              +++ ++l+sg+l++p  f++e+g+++++  ++tl +++g +W++ l   k++++++++ G k+   ang+k +gD++++  ++  +
  Rsa1.0_00017.1_g00033.1 308 ELKRYMLRSGQLRIPALFTRENGINEAG--EVTLVNKDGVEWKLHLVSVKGREQFYIK-GFKDCLVANGVKkVGDSFTLDIIR-GG 389
                              567899*****************99877..7***************999999999999.***********99********887.88 PP

                              E..EEEEE-S CS
                       B3  90 felvvkvfrk 99 
                              +++ +k+++k
  Rsa1.0_00017.1_g00033.1 390 TSPILKICSK 399
                              889***9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-158103IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-1410103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.91211103IPR003340B3 DNA binding domain
CDDcd100176.18E-1113100No hitNo description
SMARTSM010191.9E-1315103IPR003340B3 DNA binding domain
PfamPF023621.6E-82795IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-19171272IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.86E-19172272IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.2E-28176273IPR003340B3 DNA binding domain
PROSITE profilePS5086313.817176273IPR003340B3 DNA binding domain
PfamPF023626.1E-20180272IPR003340B3 DNA binding domain
CDDcd100171.69E-19183271No hitNo description
SMARTSM010197.4E-13304400IPR003340B3 DNA binding domain
PROSITE profilePS508638.402304400IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-9307399IPR015300DNA-binding pseudobarrel domain
PfamPF023629.1E-13308399IPR003340B3 DNA binding domain
CDDcd100177.06E-9309398No hitNo description
SuperFamilySSF1019367.85E-9309398IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MVDPVMVSSN NKPIFFIDLS GQNSIPMIPD SFISNHVKGK TQSTKLKLTT DVSDRSWEVE  60
LDGQRFARGW KQFSVHHGVR NDDVLSFRHD GDMVFHVTPF GRSFSRQILQ FVSSTSEDEN  120
EDDEHNIFDD DVFDEDDDEE HADAGDDDDD EDSEEELYPN KTSSKKRAIS GTENSYLLAH  180
VTSSTLSRSH LCLSNNFARS NGLNNRHCEI DLLNEDGKSW TLDLRHNKTT GQAYMCRGWT  240
SFCQGNGIKT GSSCRFKFVQ GGTKPVIQLC PNNTSTILHV PETKGDEIDS EDGSETAQMN  300
QNMTVEIELK RYMLRSGQLR IPALFTRENG INEAGEVTLV NKDGVEWKLH LVSVKGREQF  360
YIKGFKDCLV ANGVKKVGDS FTLDIIRGGT SPILKICSKM KEASFDGNHS MNRRKSRMIE  420
ASRAEEEMET CIQKKARVST EGGSSRRTRA SNKLSVGPSN LQHKKAPEPC SISDQVSKVR  480
QSIVQTLTDV RLFRSELETK EQNLETSLLE IDALGEKIEG ISKFFNVNQV
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00017.1_g00033.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892171e-131AC189217.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010F06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018470434.10.0PREDICTED: putative B3 domain-containing protein REM4 isoform X1
SwissprotQ9SB790.0REM4_ARATH; Putative B3 domain-containing protein REM4
TrEMBLA0A398ALW00.0A0A398ALW0_BRACM; Uncharacterized protein
STRINGBra011288.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96581537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]