PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00017.1_g00031.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 492aa    MW: 55235 Da    PI: 4.6348
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00017.1_g00031.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.93.2e-1222901698
                             EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                       B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                             l+l  +f+++h ++      l   d s + W+vkl  ++++    l++GW+eF+  ++  +gD++vF+++g+++f  +v+v +
  Rsa1.0_00017.1_g00031.1 22 LTLDDEFLRNHTKV------LLTSDASDKIWKVKL--DGNR----LAGGWEEFAAIHNFSDGDVLVFRHNGDETF--HVSVSS 90
                             67778888777644......55577999*******..9999....***********************9998888..888876 PP
2B357.72.1e-18150242699
                              ..-HHHHTT-EE--HHH..HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                       B3   6 tpsdvlksgrlvlpkkf.aeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                              +++++l  +rl+l+ +f ++++ ++k  ++ ++ l +e+gr+W++ l+ + + g++ +++GW +F++angL +gD++ Fkl++ s+
  Rsa1.0_00017.1_g00031.1 150 VTPSSLIDDRLYLSTDFkFTSFdEHK--KPCEIYLANEKGRKWTLILSRNISNGAFNIRRGWANFCSANGLSQGDICNFKLSE-SG 232
                              66777788999999999433334444..6669***************99999999*************************977.78 PP

                              E..EEEEE-S CS
                       B3  90 felvvkvfrk 99 
                              +++ + ++++
  Rsa1.0_00017.1_g00031.1 233 ERPELLLCSR 242
                              8889888886 PP
3B354.62e-17294392399
                              EE-..-HHHHTT-EE--HH...H.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                       B3   3 kvltpsdvlksgrlvlpkk...faeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                              + + +++  k g+l+++     f++e g+k  +s ++tl d++gr+W  +l +  +++++++++++GW+e++kan+++++D++v++
  Rsa1.0_00017.1_g00031.1 294 TLEYTPNRVKAGQLYISMAssgFLSESGIK--SSGEITLLDKHGRKWPSYLHMtgQRGREWFYIRGGWREMCKANDVQVNDSFVLE 377
                              555666667777777665411156566666..5569***************8866666666************************* PP

                              E-SSSEE..EEEEE-S CS
                       B3  84 ldgrsefelvvkvfrk 99 
                              ++  +++++ +k+++k
  Rsa1.0_00017.1_g00031.1 378 FIC-ENANPIFKLHSK 392
                              999.788899988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.969192IPR003340B3 DNA binding domain
SMARTSM010191.1E-91492IPR003340B3 DNA binding domain
CDDcd100177.00E-82288No hitNo description
Gene3DG3DSA:2.40.330.102.3E-113090IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-113289IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.424145242IPR003340B3 DNA binding domain
SMARTSM010192.4E-16145243IPR003340B3 DNA binding domain
SuperFamilySSF1019361.2E-15147243IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-13148234IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-15150242IPR003340B3 DNA binding domain
CDDcd100178.55E-16150241No hitNo description
SuperFamilySSF1019362.35E-14287382IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.6E-14287387IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.279292393IPR003340B3 DNA binding domain
PfamPF023624.9E-18292392IPR003340B3 DNA binding domain
SMARTSM010191.5E-15292393IPR003340B3 DNA binding domain
CDDcd100172.28E-13305391No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MVVPPKPSLY HLRFLTGDKP LLTLDDEFLR NHTKVLLTSD ASDKIWKVKL DGNRLAGGWE  60
EFAAIHNFSD GDVLVFRHNG DETFHVSVSS ESDDESDDTD DSESDESDDA EDDDNDDDDD  120
DDEGDVLVEK NKKPEADTSP GDSCLLRASV TPSSLIDDRL YLSTDFKFTS FDEHKKPCEI  180
YLANEKGRKW TLILSRNISN GAFNIRRGWA NFCSANGLSQ GDICNFKLSE SGERPELLLC  240
SRESGNNGHE DKEEEEEEEE EECPKADAVK ICSVGGCSKE KTTSEKNTSP RFLTLEYTPN  300
RVKAGQLYIS MASSGFLSES GIKSSGEITL LDKHGRKWPS YLHMTGQRGR EWFYIRGGWR  360
EMCKANDVQV NDSFVLEFIC ENANPIFKLH SKIENKGKGN PVEKTPEVSK RGRTRGSSRP  420
NTNLKRKQPE SCSVSDQVAN VKQSIQDTLN IIRHFRGELE TREKNLEASL LEVDDLGERI  480
LGISKILSNN LA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174188KKPCEIYLANEKGRK
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in flower development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00017.1_g00031.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892171e-117AC189217.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010F06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469625.10.0PREDICTED: B3 domain-containing protein REM1-like
SwissprotO650980.0REM1_BRAOB; B3 domain-containing protein REM1
TrEMBLA0A398AIY10.0A0A398AIY1_BRACM; Uncharacterized protein
STRINGBo1g011140.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99501736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31610.11e-145B3 family protein
Publications ? help Back to Top
  1. Franco-Zorrilla JM, et al.
    Identification of genes specifically expressed in cauliflower reproductive meristems. Molecular characterization of BoREM1.
    Plant Mol. Biol., 1999. 39(3): p. 427-36
    [PMID:10092172]