PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00012.1_g00035.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MIKC_MADS
Protein Properties Length: 255aa    MW: 30006.1 Da    PI: 8.318
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00012.1_g00035.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.13.5e-31959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             krienk+nrqvtfskRr+g++KKA+E+SvLCdaeva+++fs++gkl+eys+
  Rsa1.0_00012.1_g00035.1  9 KRIENKINRQVTFSKRRAGLFKKAHEISVLCDAEVALVVFSHKGKLFEYST 59
                             79***********************************************96 PP

2K-box106.62.8e-35791745100
                    K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                              +  + e+  + +++ e+++Lk++ie L+r+qRh+lGedL+ +s keLq+LeqqL+++lk+iRs+Kn+l++++++elq+kek++qe+
  Rsa1.0_00012.1_g00035.1  79 QLIAPESDVNTNWSMEYNRLKAKIELLERNQRHYLGEDLQAMSPKELQNLEQQLDTALKHIRSRKNQLMHDSVSELQRKEKAIQEQ 164
                              555556667889************************************************************************** PP

                    K-box  91 nkaLrkklee 100
                              n +L+k+++e
  Rsa1.0_00012.1_g00035.1 165 NSMLSKQIKE 174
                              *******987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.17161IPR002100Transcription factor, MADS-box
CDDcd002651.29E-42279No hitNo description
SuperFamilySSF554553.14E-34289IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-30323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-303859IPR002100Transcription factor, MADS-box
PfamPF014863.1E-3085172IPR002487Transcription factor, K-box
PROSITE profilePS5129716.99488178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009933Biological Processmeristem structural organization
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRAGLFK KAHEISVLCD AEVALVVFSH KGKLFEYSTD  60
SCMEKILERY ERYSYAERQL IAPESDVNTN WSMEYNRLKA KIELLERNQR HYLGEDLQAM  120
SPKELQNLEQ QLDTALKHIR SRKNQLMHDS VSELQRKEKA IQEQNSMLSK QIKEREKVLR  180
AQQEQWDQQN HGQNLPPPPQ QHQIQHPYIL SHQPSPFLNM GGLYQEEDDP MAMRRNDLDL  240
SLEPVYNCNL GCFAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-21174173MEF2 CHIMERA
6byy_B2e-21174173MEF2 CHIMERA
6byy_C2e-21174173MEF2 CHIMERA
6byy_D2e-21174173MEF2 CHIMERA
6bz1_A2e-21174173MEF2 CHIMERA
6bz1_B2e-21174173MEF2 CHIMERA
6bz1_C2e-21174173MEF2 CHIMERA
6bz1_D2e-21174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes early floral meristem identity in synergy with LEAFY. Displays a redundant function with CAULIFLOWER in the up-regulation of LEAFY. Required subsequently for the transition of an inflorescence meristem into a floral meristem, and for the normal development of sepals and petals in flowers. Regulates positively B class homeotic proteins (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00096ChIP-seqTransfer from AT1G69120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00012.1_g00035.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5058460.0AJ505846.1 Brassica oleracea var. botrytis mRNA for MADS-box protein AP1-c.
GenBankBOU674510.0U67451.1 Brassica oleracea homeotic protein boi1AP1 (Boi1AP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105460.11e-179PREDICTED: floral homeotic protein APETALA 1
RefseqXP_013652316.11e-179floral homeotic protein APETALA 1
SwissprotP0DI141e-180AP1_BRARP; Floral homeotic protein APETALA 1
TrEMBLA0A397YS551e-178A0A397YS55_BRACM; Uncharacterized protein
STRINGBostr.10273s0459.1.p1e-175(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79225110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-158MIKC_MADS family protein