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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00010.1_g00037.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
NAC |
Protein Properties |
Length: 235aa MW: 26845.4 Da PI: 7.5707 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00010.1_g00037.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 135.8 | 2.9e-42 | 6 | 137 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgy 82
+ GfrF Pt+eel+ +yL++++eg++ ++++vi+ +d+++veP++Lp+ ++ ++ ++w+fF++r++++a+g r++r++ sgy
Rsa1.0_00010.1_g00037.1 6 TIGFRFYPTEEELIAFYLRNQLEGRSgDTMHRVIPVLDVFEVEPSHLPNmageRCLGDAEQWFFFVPRQEREARGGRPSRTIGSGY 91
68***********************96556678***************534553344778************************** PP
NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
Wkatg+ +v+sk+++ +g+kkt+vfy+grap+g+kt+W m+ey++
Rsa1.0_00010.1_g00037.1 92 WKATGSPGPVFSKDNRMIGVKKTMVFYTGRAPTGRKTKWKMNEYKA 137
********************************************85 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 235 aa
Download sequence Send
to blast |
MTEELTIGFR FYPTEEELIA FYLRNQLEGR SGDTMHRVIP VLDVFEVEPS HLPNMAGERC 60 LGDAEQWFFF VPRQEREARG GRPSRTIGSG YWKATGSPGP VFSKDNRMIG VKKTMVFYTG 120 RAPTGRKTKW KMNEYKAVDK TFNVSTIPKL RHEFSLCRVY ITSGSSRAFD RRPMGNFQAE 180 RMLIRDVAVG ETSVRVESSP EASMSGGEHG YLSMNGEIVD GLTEPIWEWE QLNWP
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 1e-32 | 5 | 167 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-32 | 5 | 167 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-32 | 5 | 167 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-32 | 5 | 167 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-32 | 5 | 167 | 20 | 173 | NAC domain-containing protein 19 |
3swm_B | 1e-32 | 5 | 167 | 20 | 173 | NAC domain-containing protein 19 |
3swm_C | 1e-32 | 5 | 167 | 20 | 173 | NAC domain-containing protein 19 |
3swm_D | 1e-32 | 5 | 167 | 20 | 173 | NAC domain-containing protein 19 |
3swp_A | 1e-32 | 5 | 167 | 20 | 173 | NAC domain-containing protein 19 |
3swp_B | 1e-32 | 5 | 167 | 20 | 173 | NAC domain-containing protein 19 |
3swp_C | 1e-32 | 5 | 167 | 20 | 173 | NAC domain-containing protein 19 |
3swp_D | 1e-32 | 5 | 167 | 20 | 173 | NAC domain-containing protein 19 |
4dul_A | 1e-32 | 5 | 167 | 17 | 170 | NAC domain-containing protein 19 |
4dul_B | 1e-32 | 5 | 167 | 17 | 170 | NAC domain-containing protein 19 |
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