PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00009.1_g00046.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 603aa    MW: 67263 Da    PI: 9.6873
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00009.1_g00046.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.62.5e-07501550147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                              r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Rsa1.0_00009.1_g00046.1 501 RRPFSVAEVEALVQAVERLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 550
                              6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.864496555IPR017930Myb domain
SMARTSM007177.0E-7500553IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-10501551IPR009057Homeodomain-like
SuperFamilySSF466891.98E-15502583IPR009057Homeodomain-like
CDDcd116601.04E-16502552No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MVLQTRLEYG FNGYEVPHTP RAARSPRKSA FKKKSENNQI SSSFDLLAAV AGKLLLESGG  60
VSSSSSNNAS GDNNEDQCGG KKEPGHQMVV EEPHCDHHDD NNAERSFFVS EILPKAHEME  120
SFNRSPNPNK DFLFGSTSGI TYDSSEKFGT QELVYEEAKI HNGDCFRSDT NDKKPMLERL  180
NCEPGVSRNK DKHPTLDGIE NNDGENFSAR YTTKSFRSTL RVGDGRVKKF MSSKYCKVSS  240
NQKDTMVASS DLDLKPGYYS KKHCLKSLRS EKKFPIKKRR YFAGYTASQS EETVRNEGLS  300
GSPQKAFLST IACQKQPAFQ SKDSHVKLGI KSFKVPELFI DIPETATIGS LKRTVLEAVT  360
TILEGGLRIG VHVHGKKVRD DNKLLVQTGI SLDTLSDTLS FCLEPNPPQS TKPLCPKEYD  420
SVRLCNVPHT LTRCLPSLGK HAKPSDSAES DLDSKPTAPF GAKPFYSRAL VPVSPPLHAQ  480
ALNVVPPRKP KRSEVAQRRI RRPFSVAEVE ALVQAVERLG TGRWRDVKLR AFDNAKHRTY  540
VDLKDKWKTL VHTARISPQQ RRGEPVPQEL LDRVLLAHAY WSQQQGKQQL LEGPQNLETS  600
LGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-574885904106Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00009.1_g00046.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018450566.10.0PREDICTED: telomere repeat-binding protein 5
SwissprotQ6R0E30.0TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLM4EPG90.0M4EPG9_BRARP; Uncharacterized protein
STRINGBra030689.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32402539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.10.0TRF-like 2