PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00009.1_g00019.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bZIP

Protein Properties

Length: 320aa MW: 35616.5 Da PI: 6.4106

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00009.1_g00019.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.2	9.6e-10	126	175	5	54
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 kr++r NR +A rs +RK +i+eLe++v++L++e ++L +l + Rsa1.0_00009.1_g00019.1 126 KRAKRILANRQSAARSKERKARYIQELERRVQSLQTEATTLSAQLTLFQR 175 9****************************************998876665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.1E-16	122	186	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	1.3E-7	124	171	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.909	124	187	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.73E-10	126	177	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.2E-8	126	171	No hit	No description
CDD	cd14703	1.04E-21	127	176	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MDDKPDPRPG PNAGSFPSSF HRRSRSDDMS MFMFTDPLIS AAVPPSSDDD LFSSFIDVDS 60 LSSNPNQPIS FPNHASVPPS SSSRPRHRHS NSVDAGCAMY ASDEIMDAKK AMPPEKLSEL 120 WSIDPKRAKR ILANRQSAAR SKERKARYIQ ELERRVQSLQ TEATTLSAQL TLFQRDTNGL 180 ANENTELKLR LQAMEQQAHL RNALNEALRK EVERMKMETG EISSNSDSYD MGMQQVQYSP 240 STFMAIPPYH HGSINNGQDM MQQMRGFNQS RPMEVSNSQS VSEFLQNGRL QGLEISSNNS 300 SSLVKSEGPS LSASESSSAY

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00009.1_g00019.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ419852	1e-168	AJ419852.1 Arabidopsis thaliana mRNA for AtbZIP transcription factor.
GenBank	AY062474	1e-168	AY062474.1 Arabidopsis thaliana Similar to bZIP transcription factors (At1g06850; F4H5.7) mRNA, complete cds.
GenBank	BT000102	1e-168	BT000102.1 Arabidopsis thaliana Similar to bZIP transcription factors (At1g06850) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018448079.1	0.0	PREDICTED: transcription factor RF2b-like
Swissprot	Q6S4P4	1e-81	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A397YQV1	0.0	A0A397YQV1_BRACM; Uncharacterized protein
STRING	Bra030663.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13555	17	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06850.1	1e-118	basic leucine-zipper 52

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]