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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00009.1_g00019.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
bZIP |
Protein Properties |
Length: 320aa MW: 35616.5 Da PI: 6.4106 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00009.1_g00019.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 30.2 | 9.6e-10 | 126 | 175 | 5 | 54 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54
kr++r NR +A rs +RK +i+eLe++v++L++e ++L +l +
Rsa1.0_00009.1_g00019.1 126 KRAKRILANRQSAARSKERKARYIQELERRVQSLQTEATTLSAQLTLFQR 175
9****************************************998876665 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 320 aa
Download sequence Send
to blast |
MDDKPDPRPG PNAGSFPSSF HRRSRSDDMS MFMFTDPLIS AAVPPSSDDD LFSSFIDVDS 60 LSSNPNQPIS FPNHASVPPS SSSRPRHRHS NSVDAGCAMY ASDEIMDAKK AMPPEKLSEL 120 WSIDPKRAKR ILANRQSAAR SKERKARYIQ ELERRVQSLQ TEATTLSAQL TLFQRDTNGL 180 ANENTELKLR LQAMEQQAHL RNALNEALRK EVERMKMETG EISSNSDSYD MGMQQVQYSP 240 STFMAIPPYH HGSINNGQDM MQQMRGFNQS RPMEVSNSQS VSEFLQNGRL QGLEISSNNS 300 SSLVKSEGPS LSASESSSAY
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AJ419852 | 1e-168 | AJ419852.1 Arabidopsis thaliana mRNA for AtbZIP transcription factor. |
GenBank | AY062474 | 1e-168 | AY062474.1 Arabidopsis thaliana Similar to bZIP transcription factors (At1g06850; F4H5.7) mRNA, complete cds. |
GenBank | BT000102 | 1e-168 | BT000102.1 Arabidopsis thaliana Similar to bZIP transcription factors (At1g06850) mRNA, complete cds. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Dai S,Zhang Z,Bick J,Beachy RN
Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] - Liu Y,Dai S,Beachy RN
Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] - Dai S, et al.
Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]
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