PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00008.1_g00061.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 657aa    MW: 74525.2 Da    PI: 5.9979
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00008.1_g00061.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-18964156
                             TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                             +r+ +++t++q+++Le++F ++++p++++r  L k+l+L+ +q+k+WFqN+R++ k
  Rsa1.0_00008.1_g00061.1  9 KRTYHRHTPQQTQRLEAYFMECPNPDESQRLNLCKELDLEPDQIKFWFQNKRTQNK 64
                             689999***********************************************988 PP
2START49.71.1e-161983452129
                              HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S. CS
                    START   2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla. 77 
                              +a +a +el  +  aee++Wv ss   +  + +e++ +f+ s         ++e +++++vv+ ++++l e +ld+  +W+  ++ 
  Rsa1.0_00008.1_g00061.1 198 IAARAVEELKWLFVAEEALWVMSSidgTYVIDQESYERFSHSIKhfrkmsARVESSKDVTVVPIEATKLIEMFLDSE-KWKMLFPt 282
                              5677777788888899********988666777777777666558888999************************99.99999988 PP

                              ...EEEEEEEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEE CS
                    START  78 ...kaetlevissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvS 129
                                 ka+t+ ++ +        +  q++  +l  lsplvp R+f++vR+++   +g w+++dvS
  Rsa1.0_00008.1_g00061.1 283 ivaKAMTMHKLGTElpikencNNFQVIWEQLHILSPLVPpREFMIVRCCQNIDEGIWIVADVS 345
                              888**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.27E-16565IPR009057Homeodomain-like
PROSITE profilePS5007115.872666IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.7E-17667IPR009057Homeodomain-like
SMARTSM003898.5E-14870IPR001356Homeobox domain
CDDcd000862.06E-15964No hitNo description
PfamPF000462.8E-16964IPR001356Homeobox domain
PROSITE profilePS5084822.202188345IPR002913START domain
SuperFamilySSF559611.23E-14190397No hitNo description
CDDcd088757.26E-67193396No hitNo description
PfamPF018529.4E-12198345IPR002913START domain
PROSITE profilePS5084810.196353400IPR002913START domain
SuperFamilySSF559617.51E-10419617No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MINAMKREKR TYHRHTPQQT QRLEAYFMEC PNPDESQRLN LCKELDLEPD QIKFWFQNKR  60
TQNKARDDRY ANILLRRENE KIQCENEAML EALKNVTCPA CGGPPLGVER DHNLQNLSLV  120
NTYLTEKHDE VAKDVSMNQH QQTMVNPFAP VQGQRIFDTH ASYGTIPNNL MNDPSNSSGS  180
STFQDIQLQL DIAQLSEIAA RAVEELKWLF VAEEALWVMS SIDGTYVIDQ ESYERFSHSI  240
KHFRKMSARV ESSKDVTVVP IEATKLIEMF LDSEKWKMLF PTIVAKAMTM HKLGTELPIK  300
ENCNNFQVIW EQLHILSPLV PPREFMIVRC CQNIDEGIWI VADVSHRIVN SDQVTWIEHV  360
EVSHKPDAHR LYREILCGGS GYGAKRWTTT LERMCERMVL YSTLIIPATD WSEAITTVEG  420
RRSVMKLGER MVKNLNEMLT MSGKVDFPQQ SKCGVRISIR MNNEAGQPSG LVVSAASSFS  480
VPVTPLQVYN TLRNNETRHQ WDVLCYRNAV SEIARVFTGS NENNYITILQ PTQRHEDVMA  540
QGPKKNMMML QDCYMDELGG MIVYAPLDMA SMSLAASGEV DPMNIAILAS GFTISNDGRR  600
SMGAAEGGTI LTVVFQILVS AEDNRTREVN EQSVGMVSGL ISSTARNIKL LLNCPLE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00008.1_g00061.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437612.10.0PREDICTED: homeobox-leucine zipper protein HDG8-like
SwissprotQ9M9P40.0HDG8_ARATH; Homeobox-leucine zipper protein HDG8
TrEMBLA0A398AU250.0A0A398AU25_BRACM; Uncharacterized protein
STRINGBra021363.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM127911530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03260.10.0homeodomain GLABROUS 8