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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00007.1_g00004.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
HD-ZIP |
Protein Properties |
Length: 221aa MW: 26074.4 Da PI: 6.1802 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00007.1_g00004.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 61.7 | 1.1e-19 | 56 | 109 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
++++t+eq++ Le F ++++ e++ ++A++lgL+ rqV vWFqNrR+++k+
Rsa1.0_00007.1_g00004.1 56 KRKLTDEQVKMLEMRFGDEHKLESERKDKIAAELGLDPRQVAVWFQNRRTRWKN 109
4589************************************************95 PP
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2 | HD-ZIP_I/II | 118 | 5.1e-38 | 55 | 145 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87
+kr+l++eqvk+LE+ F e+kLe+erK ++a eLgl+prqvavWFqnrR R+k+k+lE +y++Lk+a+d++ +++rLe+ev +L
Rsa1.0_00007.1_g00004.1 55 RKRKLTDEQVKMLEMRFGDEHKLESERKDKIAAELGLDPRQVAVWFQNRRTRWKNKRLEDEYNKLKNAHDNVILDKCRLESEVLKL 140
8************************************************************************************* PP
HD-ZIP_I/II 88 reelk 92
+e+l
Rsa1.0_00007.1_g00004.1 141 KEHLY 145
*9986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 221 aa
Download sequence Send
to blast |
MNHKVDDQNM GFISQLYPDV YTQIVPQGEV KPPKRRRKKR KVAVAAGDGS NCMLRKRKLT 60 DEQVKMLEMR FGDEHKLESE RKDKIAAELG LDPRQVAVWF QNRRTRWKNK RLEDEYNKLK 120 NAHDNVILDK CRLESEVLKL KEHLYDAERE IQRLAERVEG CSSNSPVSSS VSIQHNETPF 180 FGDYEVEEDG DDYDHMVYPV PENTYIDHGE EWMNYQLNII F
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 32 | 39 | PKRRRKKR |
2 | 32 | 40 | PKRRRKKRK |
3 | 34 | 39 | RRRKKR |
4 | 34 | 40 | RRRKKRK |
5 | 38 | 57 | KRKVAVAAGDGSNCMLRKRK |
6 | 53 | 58 | LRKRKL |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC189549 | 1e-113 | AC189549.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005C21, complete sequence. |