PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00005.1_g00006.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

C2H2

Protein Properties

Length: 360aa MW: 40719.9 Da PI: 7.0528

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00005.1_g00006.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.4e-05	200	219	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Rsa1.0_00005.1_g00006.1 200 FSCPLCFKTFNRYNNMQMHM 219 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	3.0E-5	200	219	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.66	200	227	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	202	222	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.54E-5	270	304	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.3E-4	271	304	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MSDPACIFSN GFFDHYDYSF NYSTSLSHIY NSNGSLYYSS NTKNINPNST SPDSPPLREA 60 LPLLSLSPIH KHQKASVPHH EYYFRETTEQ SSNSNFLDHD LGQCQETQNH DVTVDLHLGL 120 PNLGGDAIAC GGGGSSSSDA ILDYSDQEHH HDLHQDRHQY QVVEVTLASD HDGHGGEQRG 180 NHHHYWIPTP SQILMGPTQF SCPLCFKTFN RYNNMQMHMW GHGSQYRKGP ESLRGTQPTA 240 MLRLPCYCCA PGCKNNINHP RARPLKDFRT LQTHYKRKHG ARPFACRRCG NAFAVKGDWR 300 THEKNCGKLW YCSCGSDFKH KRSLKDHVKA FGNGHVPCFG NDCFGDHEDE EAASDVEHQE

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MSDPACIFSN GFFDHYDYSF NYSTSLSHIY NSNGSLYYSS NTKNINPNST SPDSPPLREA  60
LPLLSLSPIH KHQKASVPHH EYYFRETTEQ SSNSNFLDHD LGQCQETQNH DVTVDLHLGL  120
PNLGGDAIAC GGGGSSSSDA ILDYSDQEHH HDLHQDRHQY QVVEVTLASD HDGHGGEQRG  180
NHHHYWIPTP SQILMGPTQF SCPLCFKTFN RYNNMQMHMW GHGSQYRKGP ESLRGTQPTA  240
MLRLPCYCCA PGCKNNINHP RARPLKDFRT LQTHYKRKHG ARPFACRRCG NAFAVKGDWR  300
THEKNCGKLW YCSCGSDFKH KRSLKDHVKA FGNGHVPCFG NDCFGDHEDE EAASDVEHQE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00005.1_g00006.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ311811	0.0	AJ311811.2 Arabidopsis thaliana mRNA for WIP4 protein (At3g20880 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018458256.1	0.0	PREDICTED: zinc finger protein WIP4-like
Swissprot	Q8W030	0.0	ZWIP4_ARATH; Zinc finger protein WIP4
TrEMBL	A0A078J2W5	0.0	A0A078J2W5_BRANA; BnaA01g36760D protein
STRING	Bra023918.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM239	28	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20880.1	0.0	WIP domain protein 4

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610]