|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Rsa1.0_00004.1_g00007.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
Family |
CO-like |
Protein Properties |
Length: 402aa MW: 45545 Da PI: 5.3912 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00004.1_g00007.1 | genome | RGD | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 24.3 | 6.4e-08 | 13 | 56 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
+r C+ + + +++++C ++ +lC++C + H+ H++v
Rsa1.0_00004.1_g00007.1 13 ARACDSCVKRRARWYCAADDAFLCHSCDGKVHSAnplarrHERV 56
578***************************9*657888888876 PP
|
2 | CCT | 68.5 | 1.8e-23 | 353 | 396 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
Rsa1.0_00004.1_g00007.1 353 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 396
9*****************************************97 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 402 aa
Download sequence Send
to blast |
MKSLANVVGG KTARACDSCV KRRARWYCAA DDAFLCHSCD GKVHSANPLA RRHERVRLKS 60 ASPGHSSSSP PHPPTWHQGF TRKSRTRRGG KKSHAMVFHD LVPEMSSEDQ SFEVEEQLIF 120 EVPVLNPMGD EQRLNEPMET KIEFPLMSIC FKSSEEEDDN AESCLNGLFP TDIELAQFSA 180 DVEILLGGGA DREFHAMDEL GLGEMLKIDK EEVEEEEEVA TVKVCDLDDA DETTPFEISF 240 EYEYSQRTTF EEKDEKEDVE KNMIDVGSVN EISGSIKEEN NEKIHMLRLD YESVISTWGG 300 QGTPWTAHEP PQIDLNMLCC PTDSMVESGG EDHHHKYFRG LGLHMGDAGS GGREARVSRY 360 REKRRTRLFS KKIRYEVRKL NAEKRPRMKG RFVKRSSIAA AH
|
Nucleic Localization
Signal ? help
Back to Top |
|
No. |
Start |
End |
Sequence |
1 | 363 | 379 | RRTRLFSKKIRYEVRKL |