PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00003.1_g00028.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | WRKY | ||||||||
Protein Properties | Length: 215aa MW: 24175.8 Da PI: 9.6571 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.2 | 2.3e-30 | 154 | 211 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 Dgy+Wr YG+K vk s++prsYYrCt+++C+vkk+ve++ edp+++++tYeg+Hnh+ Rsa1.0_00003.1_g00028.1 154 VDGYRWRIYGRKAVKTSPYPRSYYRCTTQRCNVKKRVEKAVEDPTIFITTYEGRHNHP 211 5********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-30 | 138 | 211 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-25 | 146 | 212 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.944 | 148 | 213 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.5E-31 | 153 | 212 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-23 | 155 | 211 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MSNETKDFYN YQFASSFSLC EIMNLPTSAS SSYGNNVFDP SSYSSTDCLQ ISPGAYQSLL 60 QKIFGISPTS SEVFNSSIGE TPTRVSAPSS YSEANHPGED SSTSRRKRKL AEDGGEENQS 120 SKKVFRGKAK KNEEKKQREP RVSVMVKSQA GHIVDGYRWR IYGRKAVKTS PYPRSYYRCT 180 TQRCNVKKRV EKAVEDPTIF ITTYEGRHNH PSDSV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-23 | 143 | 210 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 4e-23 | 143 | 210 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00003.1_g00028.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU912399 | 1e-108 | EU912399.1 Brassica napus WRKY28-1 transcription factor (WRKY28-1) mRNA, complete cds. | |||
GenBank | KC246574 | 1e-108 | KC246574.1 Brassica napus WRKY transcription factor 28.1 (WRKY28.1) mRNA, complete cds. | |||
GenBank | KF430045 | 1e-108 | KF430045.1 Brassica rapa WRKY transcription factor 28 (WRKY28) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018480586.1 | 1e-159 | PREDICTED: probable WRKY transcription factor 28 | ||||
Swissprot | Q8VWJ2 | 7e-96 | WRK28_ARATH; WRKY transcription factor 28 | ||||
TrEMBL | A0A0D3DET2 | 1e-116 | A0A0D3DET2_BRAOL; WRKY transcription factor | ||||
TrEMBL | A0A3P6ER93 | 1e-116 | A0A3P6ER93_BRAOL; WRKY transcription factor | ||||
STRING | Bo7g105800.1 | 1e-117 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1524 | 26 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18170.1 | 3e-98 | WRKY DNA-binding protein 28 |
Publications ? help Back to Top | |||
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