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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00003.1_g00028.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
WRKY |
Protein Properties |
Length: 215aa MW: 24175.8 Da PI: 9.6571 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00003.1_g00028.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 96.2 | 2.3e-30 | 154 | 211 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
Dgy+Wr YG+K vk s++prsYYrCt+++C+vkk+ve++ edp+++++tYeg+Hnh+
Rsa1.0_00003.1_g00028.1 154 VDGYRWRIYGRKAVKTSPYPRSYYRCTTQRCNVKKRVEKAVEDPTIFITTYEGRHNHP 211
5********************************************************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 215 aa
Download sequence Send
to blast |
MSNETKDFYN YQFASSFSLC EIMNLPTSAS SSYGNNVFDP SSYSSTDCLQ ISPGAYQSLL 60 QKIFGISPTS SEVFNSSIGE TPTRVSAPSS YSEANHPGED SSTSRRKRKL AEDGGEENQS 120 SKKVFRGKAK KNEEKKQREP RVSVMVKSQA GHIVDGYRWR IYGRKAVKTS PYPRSYYRCT 180 TQRCNVKKRV EKAVEDPTIF ITTYEGRHNH PSDSV
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU912399 | 1e-108 | EU912399.1 Brassica napus WRKY28-1 transcription factor (WRKY28-1) mRNA, complete cds. |
GenBank | KC246574 | 1e-108 | KC246574.1 Brassica napus WRKY transcription factor 28.1 (WRKY28.1) mRNA, complete cds. |
GenBank | KF430045 | 1e-108 | KF430045.1 Brassica rapa WRKY transcription factor 28 (WRKY28) mRNA, complete cds. |