PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00001.1_g00053.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ZF-HD
Protein Properties Length: 225aa    MW: 24374.2 Da    PI: 8.0714
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00001.1_g00053.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer107.29.7e-3447102258
              ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                              +k+rY+eClkNhA+++GghavDGC+Efmps ge+g+ +alkCaACgCHRnFHR+e+e
  Rsa1.0_00001.1_g00053.1  47 SKIRYRECLKNHAVNIGGHAVDGCCEFMPS-GEDGSLDALKCAACGCHRNFHRKETE 102
                              579**************************9.999********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.8E-3049101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-2649102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.1E-2950100IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.41851100IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.606.3E-33149224IPR009057Homeodomain-like
SuperFamilySSF466892.36E-20150223IPR009057Homeodomain-like
TIGRFAMsTIGR015657.7E-28163219IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MNFEEQEEEM EMSGVNPTGG YDSLSGEGAT SSGGGGGGGG IKSVGGSKIR YRECLKNHAV  60
NIGGHAVDGC CEFMPSGEDG SLDALKCAAC GCHRNFHRKE TEVMSGRSHR VPTYYNRPPQ  120
LPPPGYLHIT SPAAVGQPYR PPVASGDEED TSNPSSSGGT RAKRFRTKFT AEQKEKMLAF  180
AERLGWRIQK HDDAAVEQFC AETGVRRQVL KIWMHNNKNS LGKKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-361622201775ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein. Putative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00001.1_g00053.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532610.0AK353261.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-39-I06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469960.11e-168PREDICTED: zinc-finger homeodomain protein 2
SwissprotQ9SB611e-120ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLM4DBG21e-141M4DBG2_BRARP; Uncharacterized protein
STRINGBra013822.1-P1e-142(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45052454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-113homeobox protein 22
Publications ? help Back to Top
  1. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]