![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_00001.1_g00011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 341aa MW: 37295 Da PI: 10.2234 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.6 | 3.5e-30 | 272 | 330 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +d ++++tYeg+H h Rsa1.0_00001.1_g00011.1 272 ADEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDAMMLIVTYEGDHSHA 330 69*************************988****************************6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 5.7E-16 | 236 | 269 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 2.5E-32 | 259 | 330 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.459 | 266 | 332 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-25 | 269 | 330 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.9E-36 | 271 | 331 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.9E-26 | 273 | 329 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 341 aa Download sequence Send to blast |
MAVELMMNRN YGGLRVKGEE GVFSANMEEE EDTALREAAS AGIHGVKEFL KLIGQKSQPT 60 EITAVTDVAV NSFKKVISLL GRSRTGHARF RRGPATTKTE ESGGDWKTEE KPATTTTTVL 120 LNRQNTEQNG GSAFRVYCPT PIHRRPPLSH NNNSPTIKNG SSSSANGRSP QEPSTINFTP 180 SPPVSAANSF MSSHHRCDTE SNQMSSGFEF TNPSSQVSGS IGKPPLSSSV SLKRKCNSSP 240 SGRCHCTKKR KSRVKRVIRV PAVSSKMADI PADEYSWRKY GQKPIKGSPH PRGYYKCSSV 300 RGCPARKHVE RALDDAMMLI VTYEGDHSHA LVLESHHDKA L |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-21 | 259 | 331 | 2 | 73 | WRKY transcription factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 232 | 250 | KRKCNSSPSGRCHCTKKRK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_00001.1_g00011.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KM593132 | 0.0 | KM593132.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY7) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018472336.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 7 | ||||
Swissprot | Q9STX0 | 1e-167 | WRKY7_ARATH; Probable WRKY transcription factor 7 | ||||
TrEMBL | A0A398ATE9 | 0.0 | A0A398ATE9_BRACM; Uncharacterized protein | ||||
STRING | Bo1g037740.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1715 | 28 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G24240.1 | 1e-157 | WRKY DNA-binding protein 7 |