PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC9964_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 132aa MW: 15105.3 Da PI: 4.9626 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 52.2 | 7.7e-17 | 58 | 93 | 8 | 43 |
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 nrqvtf+kRrng++ KA LS+LC+ vav+++s RrC9964_p1 58 NRQVTFCKRRNGLMEKARQLSILCGSSVAVLMVSRG 93 9********************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PRINTS | PR00404 | 3.8E-8 | 45 | 65 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.0E-11 | 48 | 102 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.8E-16 | 58 | 96 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 1.95E-15 | 58 | 93 | No hit | No description |
SuperFamily | SSF55455 | 3.01E-15 | 58 | 105 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.385 | 58 | 103 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.8E-8 | 65 | 80 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.8E-8 | 80 | 101 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MEEDDEFGEE ESNICFKNQE ILVANDLDLS FHWYQFRFLD VLLGFEIGSR DSLVMVFNRQ 60 VTFCKRRNGL MEKARQLSIL CGSSVAVLMV SRGYKMVVLR SDPIAPDVAS EIDSKSTPIF 120 SPISQHHRKE IG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM28908 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65080.1 | 1e-15 | MIKC_MADS family protein |