PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC989_p4

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bZIP

Protein Properties

Length: 149aa MW: 17057.5 Da PI: 5.9964

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC989_p4	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	39.2	1.5e-12	51	95	5	49
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 ++ +r ++NRe+A+rsR+RKk + e L+e+v++L+ +N++L ++l RrC989_p4 51 RKRKRTISNRESAKRSRLRKKRRFEDLTEEVDQLKLKNQELVNQL 95 577999*********************************998554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.6E-11	47	118	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.8E-10	48	97	No hit	No description
PROSITE profile	PS50217	10.553	49	98	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.7E-10	51	95	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.18E-10	51	98	No hit	No description
PROSITE pattern	PS00036	0	54	69	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MFSTSLEPVH ICFDDATITG DEITEILAFL QSDTSDNPSG SNELVAPVDE RKRKRTISNR 60 ESAKRSRLRK KRRFEDLTEE VDQLKLKNQE LVNQLADVLS CGNAISQENN RLKTESVCLE 120 IRLLELYRFL VAMQSPISTR LNYIAKLLI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	52	72	RKRTISNRESAKRSRLRKKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018454295.1	1e-103	PREDICTED: bZIP transcription factor 2
Swissprot	Q9LQ65	4e-71	BZIP4_ARATH; Basic leucine zipper 4
TrEMBL	A0A078JKB8	5e-87	A0A078JKB8_BRANA; BnaAnng23880D protein
TrEMBL	A0A397XUE6	5e-87	A0A397XUE6_BRACM; Uncharacterized protein
STRING	Bra027855.1-P	6e-87	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12232	24	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59530.1	3e-73	basic leucine-zipper 4

Publications ? help Back to Top
Guo YL, et al. Genome-wide comparison of nucleotide-binding site-leucine-rich repeat-encoding genes in Arabidopsis. Plant Physiol., 2011. 157(2): p. 757-69 [PMID:21810963] Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Ma H, et al. ZmbZIP4 Contributes to Stress Resistance in Maize by Regulating ABA Synthesis and Root Development. Plant Physiol., 2018. 178(2): p. 753-770 [PMID:30126870]