PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9752_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 371aa    MW: 41726.9 Da    PI: 4.815
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9752_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00022203225123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ykC  Cgk F++   L  H  +H
  RrC9752_p1 203 YKCDVCGKEFTSYQALGGHKASH 225
                 9***********99999998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.61E-9202277No hitNo description
PROSITE profilePS5015710.658203225IPR007087Zinc finger, C2H2
SMARTSM003550.0059203225IPR015880Zinc finger, C2H2-like
PfamPF139127.8E-13203226IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.5E-4203225IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280205225IPR007087Zinc finger, C2H2
SMARTSM003550.092255277IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-11255279IPR007087Zinc finger, C2H2
PROSITE profilePS501578.725255279IPR007087Zinc finger, C2H2
PROSITE patternPS000280257277IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MDLQLVDAMM QLSPARRATV KRVLECAIQN HSPKRRCLQK EEEEECATGT VCVEPRLQSS  60
DQSIQQDYVD AVYTSRFRTF TQALDGQCSS DDDDETPSPS SSETVEQRII PFQQQQEDEY  120
EDDVVSTELT LGCSSAQSLR KLSNHDGNLS PSPYNEPWSE DDASAVFLLQ LSRDLPTQRQ  180
PQPLRIQHQP QTQTDTPQRF DSYKCDVCGK EFTSYQALGG HKASHRVKLQ PLVENANAEA  240
GGKTRPRMAP SGKIHKCSIC DVEFPTGQAL GGHKRRHYGG VLGGHKRSHD DEVISGDNMS  300
SPTNHESVES DRRDEYSPNH ESVVSDRTQN FLRLLDLNEH PLPEFDDNIS RDVEEVESAI  360
VANKLLQLLK Y
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018470625.10.0PREDICTED: uncharacterized protein LOC108842259
TrEMBLA0A078ILT11e-131A0A078ILT1_BRANA; BnaA06g37620D protein
STRINGBra018817.1-P1e-127(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149691217
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.22e-25zinc-finger protein 2