PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

TALE

Protein Properties

Length: 669aa MW: 73863.5 Da PI: 7.2347

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC970_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.7	2.2e-09	467	504	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + RrC970_p2 467 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 504 664559******************************88 PP
2	BELL	122.5	1.8e-39	325	396	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLl++leeVd+rY++y+eq+q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkda+a q+ RrC970_p2 325 DRIEHQRRKVKLLTMLEEVDRRYNHYCEQMQMVVNSFDIVMGHGAALPYTALAQKAMSRHFRCLKDAVAAQL 396 589******************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	4.1E-78	258	394	IPR006563	POX domain
Pfam	PF07526	6.5E-50	263	393	IPR006563	POX domain
PROSITE profile	PS50071	12.568	445	508	IPR001356	Homeobox domain
SMART	SM00389	1.2E-9	448	512	IPR001356	Homeobox domain
CDD	cd00086	5.91E-12	448	509	No hit	No description
SuperFamily	SSF46689	2.95E-17	449	515	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.7E-29	451	514	IPR009057	Homeodomain-like
Pfam	PF05920	3.3E-18	465	504	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 669 aa Download sequence Send to blast
MSQDYHHHHH QQHQGGIFSF SNGFDRLDST SSTTQQKQEH QSVKMDEESS VAGSGIPVYE 60 TAGILSDMFN FPGSSGAVGG GDPDHDQSFR SNRQFLGKQL DQNIPANSAA AMQLFLMNPP 120 PPQQPPSPSS TTTKRSHHNN SSTLHMLLPN PSHQQGYTST MSMHQIPHQH QEQLTWQSSS 180 SSDHLHHHHH YNSQTEIGTI HSGGQGLSLS LSSSLEAAAK AEEYRNIYYG SKTTLLADYP 240 QHHLRSSPAV AAASSSTAGA INILRSSRYT KAAQELLEEF CTVGRGFSKK NKLRNSSNPN 300 TSGGDGGSPS SAGAMKDQPP LSASDRIEHQ RRKVKLLTML EEVDRRYNHY CEQMQMVVNS 360 FDIVMGHGAA LPYTALAQKA MSRHFRCLKD AVAAQLRQIC ELLGDKDAAG ISSSGLTKGE 420 TPRLRLLEQS LRQQRAFHQM GMMEQEAWRP QRGLPERSVN ILRAWLFEHF LHPYPSDADK 480 HLLARQTGLS RNQVSNWFIN ARVRLWKPMV EEMYQQESKE REREALEESE QDQEPRNNNN 540 DKGTKSNNND SNLTPVRTTS QTSMTAAQSA TTAPDAGVAT GHRLRSSDIN AYENDPSSSY 600 TNVAAVSSYA GPTAFSAVAT CQKGIGGFDD TNMDGDNVIS FGTNPTGDVS LTLGLRHVSN 660 MPDQRFLLR

Sequence ? help Back to Top

Protein Sequence Length: 669 aa Download sequence Send to blast

MSQDYHHHHH QQHQGGIFSF SNGFDRLDST SSTTQQKQEH QSVKMDEESS VAGSGIPVYE  60
TAGILSDMFN FPGSSGAVGG GDPDHDQSFR SNRQFLGKQL DQNIPANSAA AMQLFLMNPP  120
PPQQPPSPSS TTTKRSHHNN SSTLHMLLPN PSHQQGYTST MSMHQIPHQH QEQLTWQSSS  180
SSDHLHHHHH YNSQTEIGTI HSGGQGLSLS LSSSLEAAAK AEEYRNIYYG SKTTLLADYP  240
QHHLRSSPAV AAASSSTAGA INILRSSRYT KAAQELLEEF CTVGRGFSKK NKLRNSSNPN  300
TSGGDGGSPS SAGAMKDQPP LSASDRIEHQ RRKVKLLTML EEVDRRYNHY CEQMQMVVNS  360
FDIVMGHGAA LPYTALAQKA MSRHFRCLKD AVAAQLRQIC ELLGDKDAAG ISSSGLTKGE  420
TPRLRLLEQS LRQQRAFHQM GMMEQEAWRP QRGLPERSVN ILRAWLFEHF LHPYPSDADK  480
HLLARQTGLS RNQVSNWFIN ARVRLWKPMV EEMYQQESKE REREALEESE QDQEPRNNNN  540
DKGTKSNNND SNLTPVRTTS QTSMTAAQSA TTAPDAGVAT GHRLRSSDIN AYENDPSSSY  600
TNVAAVSSYA GPTAFSAVAT CQKGIGGFDD TNMDGDNVIS FGTNPTGDVS LTLGLRHVSN  660
MPDQRFLLR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	1e-16	454	512	5	63	Homeobox protein Meis2
3k2a_B	1e-16	454	512	5	63	Homeobox protein Meis2
4xrm_A	2e-16	454	512	5	63	Homeobox protein Meis2
4xrm_B	2e-16	454	512	5	63	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF173816	0.0	AF173816.1 Arabidopsis thaliana bel1-like homeodomain 2 (BLH2) mRNA, complete cds.
GenBank	AY050459	0.0	AY050459.1 Arabidopsis thaliana AT4g36870/C7A10_490 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018447383.1	0.0	PREDICTED: BEL1-like homeodomain protein 2
Swissprot	Q9SW80	0.0	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	A0A397YM21	0.0	A0A397YM21_BRACM; Uncharacterized protein
STRING	Bo3g153820.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2166	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	0.0	BEL1-like homeodomain 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]