PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC965_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 409aa    MW: 45817 Da    PI: 8.0315
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC965_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.5e-3188145260
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  e+s+ +++++ei+Y+g+H+h+k
  RrC965_p4  88 DDGYNWRKYGQKHVKGSEFPRSYYKCTHRNCEVKKVFEKSH-EGQIIEIVYKGTHDHPK 145
                8**************************************99.***************85 PP
2WRKY106.71.2e-33252310159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+v+g+++prsYY+Ct +gCpv+k+ver+++dpk+v++tYeg+Hnh+
  RrC965_p4 252 LDDGYRWRKYGQKVVRGNPNPRSYYKCTASGCPVRKHVERASHDPKAVVTTYEGKHNHD 310
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.89482146IPR003657WRKY domain
SuperFamilySSF1182901.83E-2484146IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.7E-2685146IPR003657WRKY domain
SMARTSM007747.8E-3287145IPR003657WRKY domain
PfamPF031069.8E-2488144IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.1E-37237312IPR003657WRKY domain
SuperFamilySSF1182902.22E-29244312IPR003657WRKY domain
PROSITE profilePS5081138.457247312IPR003657WRKY domain
SMARTSM007742.6E-38252311IPR003657WRKY domain
PfamPF031065.2E-26253310IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MDPDDVSNQN ESRLDLFGGG ARYKLMSPAK LPISRSTCIT TIPPGLSPTS FLESPVLLSN  60
IKTIPLVSER SDQNECRGRS APSMILADDG YNWRKYGQKH VKGSEFPRSY YKCTHRNCEV  120
KKVFEKSHEG QIIEIVYKGT HDHPKPQPSR RNLSGLVMPA AQEERLDKCS SFKSQDEKGS  180
SLYNTSPPME QNGNDDGGDL AMSNRNNDDV DDNDPFSKRR KVDGAMELIP LVKQPIREPR  240
LVVQTLSEVD ILDDGYRWRK YGQKVVRGNP NPRSYYKCTA SGCPVRKHVE RASHDPKAVV  300
TTYEGKHNHD IPKARSNNNS HHDMSAPMFR PEETTTDTVS LDLGVGIGPD NTSIEQIQQE  360
QNIRSEFVHR TQTQTNGAAG FRFVHGPPVG FYCANSLNAG NDHQYNGSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-3786312877Probable WRKY transcription factor 4
2lex_A2e-3786312877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931360.0KM593136.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013622213.10.0PREDICTED: probable WRKY transcription factor 20
SwissprotQ93WV01e-150WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A398A1Y30.0A0A398A1Y3_BRACM; Uncharacterized protein
STRINGBo3g021460.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-146WRKY family protein