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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
RrC9594_p1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
NAC |
Protein Properties |
Length: 324aa MW: 36377.7 Da PI: 8.7368 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
RrC9594_p1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 171.5 | 2.5e-53 | 16 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99
lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+e+d+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++++ ++++
RrC9594_p1 16 LPPGFRFHPTDEELVVHYLKKKAASIPLPV-SIIAEIDLYKFDPWELPSKASFGEQEWYFFSPRDRKYPNGVRPNRAATSGYWKATGTDKPIFTCNSHK 113
79****************************.89***************988899********************************************* PP
NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
vg+kk Lvfy g+ pkg ktdW+mheyrl
RrC9594_p1 114 VGVKKALVFYGGKPPKGIKTDWIMHEYRL 142
***************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 324 aa
Download sequence Send
to blast |
MENMGDSTIG PGHPHLPPGF RFHPTDEELV VHYLKKKAAS IPLPVSIIAE IDLYKFDPWE 60 LPSKASFGEQ EWYFFSPRDR KYPNGVRPNR AATSGYWKAT GTDKPIFTCN SHKVGVKKAL 120 VFYGGKPPKG IKTDWIMHEY RLTDGNLNTA AKPPDSTTSR KNSLRLDDWV LCRIYKKNSS 180 QRPTMERVLL REDLMEGMLS KSSANSSSTS VLDNNNNNNN NNNEEHFFDG MAVSSDKRSL 240 CGQYRIGHEA TGSSSFGSFL SSKRFHHTSD LNNDNYNVSF VSMLSEIPQS SGFHGNGVID 300 TTSTLADHGV LRQAFQLPNM NWHP
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 4e-74 | 16 | 180 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-74 | 16 | 180 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-74 | 16 | 180 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-74 | 16 | 180 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-74 | 16 | 180 | 20 | 171 | NAC domain-containing protein 19 |
3swm_B | 4e-74 | 16 | 180 | 20 | 171 | NAC domain-containing protein 19 |
3swm_C | 4e-74 | 16 | 180 | 20 | 171 | NAC domain-containing protein 19 |
3swm_D | 4e-74 | 16 | 180 | 20 | 171 | NAC domain-containing protein 19 |
3swp_A | 4e-74 | 16 | 180 | 20 | 171 | NAC domain-containing protein 19 |
3swp_B | 4e-74 | 16 | 180 | 20 | 171 | NAC domain-containing protein 19 |
3swp_C | 4e-74 | 16 | 180 | 20 | 171 | NAC domain-containing protein 19 |
3swp_D | 4e-74 | 16 | 180 | 20 | 171 | NAC domain-containing protein 19 |
4dul_A | 4e-74 | 16 | 180 | 17 | 168 | NAC domain-containing protein 19 |
4dul_B | 4e-74 | 16 | 180 | 17 | 168 | NAC domain-containing protein 19 |
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KF974759 | 0.0 | KF974759.1 Brassica napus NAC transcription factor 25-1 (NAC25-1.1) mRNA, complete cds. |