PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC9582_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 354aa MW: 39892.3 Da PI: 6.647

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC9582_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	57.1	3.2e-18	207	256	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f++Lr+l+P++ ++K +Ka+ L +++eYI+ Lq RrC9582_p1 207 RSKHSATEQRRRSKINDRFQTLRQLIPNS----DQKRDKASFLLEVIEYIHFLQ 256 889***********************9....9****************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	4.5E-22	204	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.95E-19	205	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.257	205	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.9E-16	207	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.28E-15	207	259	No hit	No description
SMART	SM00353	4.3E-14	211	261	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MELPQSRVIE AQGGYPKTHD FLQPLERVGT RASAKEEGTR GSVDTAETSS QLKSPYVHNQ 60 HVLPGGIGTY TISHMPYLYH NHLQRVPKPK VSQMFKVSQA SCNERNAVED NSVSNCSSYA 120 ANNGFTLWNE SVEKKGHTRK RQQSQSFMDM IKSAKGSSQE DDLDDDDEEF VTNKGNNTST 180 SQCQRVDLRV RVDGKGHCNE QMPNTPRSKH SATEQRRRSK INDRFQTLRQ LIPNSDQKRD 240 KASFLLEVIE YIHFLQEKVD KHEPPEGTVP VLAEAQAVDM ERQQCLKRAM DTTNSFPVLG 300 QRNSFFSPES PQICPISSSD VAAMDCENLR EEKEVEELSI HKGTISISSV YSQG

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MELPQSRVIE AQGGYPKTHD FLQPLERVGT RASAKEEGTR GSVDTAETSS QLKSPYVHNQ  60
HVLPGGIGTY TISHMPYLYH NHLQRVPKPK VSQMFKVSQA SCNERNAVED NSVSNCSSYA  120
ANNGFTLWNE SVEKKGHTRK RQQSQSFMDM IKSAKGSSQE DDLDDDDEEF VTNKGNNTST  180
SQCQRVDLRV RVDGKGHCNE QMPNTPRSKH SATEQRRRSK INDRFQTLRQ LIPNSDQKRD  240
KASFLLEVIE YIHFLQEKVD KHEPPEGTVP VLAEAQAVDM ERQQCLKRAM DTTNSFPVLG  300
QRNSFFSPES PQICPISSSD VAAMDCENLR EEKEVEELSI HKGTISISSV YSQG

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269\|PubMed:15680330}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC149635	0.0	AC149635.1 Genomic sequence for broccoli [Brassica oleracea L. (Italica group)] BAC clone B19N3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018438685.1	0.0	PREDICTED: transcription factor BIM1-like isoform X2
Swissprot	Q9LEZ3	5e-92	BIM1_ARATH; Transcription factor BIM1
TrEMBL	M4EKN7	0.0	M4EKN7_BRARP; Uncharacterized protein
STRING	Bra029354.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18805	7	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.6	1e-92	bHLH family protein

Publications ? help Back to Top
Liang T, et al. UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis. Dev. Cell, 2018. 44(4): p. 512-523.e5 [PMID:29398622]