PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC954_p4

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

G2-like

Protein Properties

Length: 168aa MW: 19367.5 Da PI: 10.1054

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC954_p4	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.8	4.4e-32	24	77	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++Fv+ v+ LGG+ kAtPk +l++m+vkgLt++hvkSHLQ+YR RrC954_p4 24 PRLRWTPELHQNFVHSVNMLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYRG 77 8****************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.193	20	80	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.8E-29	20	78	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.73E-15	24	77	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-21	24	76	IPR006447	Myb domain, plants
Pfam	PF00249	5.0E-8	25	76	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MGRCRRSSDG GISGVRPYVR SPVPRLRWTP ELHQNFVHSV NMLGGQYKAT PKLVLKIMDV 60 KGLTISHVKS HLQMYRGYKP TLLGRPEEED KTMKIIFMTA CLNTQGMIVF WTSADNDDDD 120 FLSIVSMERT KTFAGIGESF KFQSNHFLEV IKIGSIYRSY IFNLWFHK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-20	25	76	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-20	25	76	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-20	25	76	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-20	25	76	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-20	25	76	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-20	25	76	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-20	25	76	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-20	25	76	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-20	25	76	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-20	25	76	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-20	25	76	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-20	25	76	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018438481.1	2e-82	PREDICTED: putative Myb family transcription factor At1g14600
Swissprot	Q700D9	5e-65	MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBL	A0A0D3DXC0	7e-74	A0A0D3DXC0_BRAOL; Uncharacterized protein
STRING	Bo8g106700.1	1e-74	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	2e-67	G2-like family protein