PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC949_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 149aa    MW: 17431 Da    PI: 9.4588
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC949_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_137.45.6e-1252108561
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                k+ rr  +NR+AA++sR +K+++i++L +k+  L+ +  +L++++e+ +++ + l+ 
  RrC949_p4  52 KKLRRIVSNRVAAQKSRWKKLQYIDNLVTKSRDLQWQVNMLRSQVEMASEQKQCLER 108
                899*******************************************99998877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.7E-1148112IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.02550113IPR004827Basic-leucine zipper domain
PfamPF001702.7E-952109IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.5E-1152107No hitNo description
SuperFamilySSF579592.6E-1152107No hitNo description
CDDcd147034.03E-1053104No hitNo description
PROSITE patternPS0003605570IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MSDPSFPVPT SFQVSNGGSQ EEEKKVGYVN YEVEPGFTIR LRQNIDPAMD PKKLRRIVSN  60
RVAAQKSRWK KLQYIDNLVT KSRDLQWQVN MLRSQVEMAS EQKQCLEREQ MELKECMSGW  120
LHYFISSQGE IEANTAEIER LKKKMARMI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018443367.11e-108PREDICTED: basic leucine zipper 19
TrEMBLA0A397XVW41e-93A0A397XVW4_BRACM; Uncharacterized protein
STRINGBo9g175190.14e-94(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144181821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07160.18e-60bZIP family protein