PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9393_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 473aa    MW: 53468.2 Da    PI: 7.5146
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9393_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.2e-17230276148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT +Ed ll ++v ++G+++W+ Ia++++ gR +kqc++rw+++l
       RrC9393_p1 230 KGQWTSDEDRLLMQLVGLHGTKRWSQIAKMLQ-GRVGKQCRERWHNHL 276
                      799*****************************.*************97 PP
2Myb_DNA-binding54.62.5e-17283324245
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + W++eEd +l++a+k+ G++ W+ Iar+++ gRt++ +k++w+
       RrC9393_p1 283 DGWSEEEDRILIEAHKEIGNR-WAEIARKLP-GRTENTIKNHWN 324
                      56*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.077225280IPR017930Myb domain
SuperFamilySSF466899.36E-31227323IPR009057Homeodomain-like
SMARTSM007173.7E-15229278IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-27231284IPR009057Homeodomain-like
CDDcd001675.27E-14233276No hitNo description
PfamPF139211.0E-17233290No hitNo description
SMARTSM007172.7E-16281329IPR001005SANT/Myb domain
PROSITE profilePS5129420.836281331IPR017930Myb domain
CDDcd001672.00E-13285327No hitNo description
Gene3DG3DSA:1.10.10.604.8E-21285329IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010439Biological Processregulation of glucosinolate biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1904095Biological Processnegative regulation of endosperm development
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MHYPYLASVI FDDNVTLKDV HPSLTDDASF VQNVHHKPFH ANLDRSHVPS IINSDLCHQN  60
PILKISNATS DHIPNLNISP RHYDMQPHTF DSVSKYIFNG ITSSPCTEAF EAYLRGISSD  120
QDLFNMACNT SHPVESNDLP NISHVPIDNT MWDNNRNQGI NFGTESIFNL AMVDSYGAPK  180
PICILGANDD TTMNQHQNNQ IMIKADQIKK NKRFQMRRGS KLTRKTSIIK GQWTSDEDRL  240
LMQLVGLHGT KRWSQIAKML QGRVGKQCRE RWHNHLRPDI KKDGWSEEED RILIEAHKEI  300
GNRWAEIARK LPGRTENTIK NHWNATKRKQ HSRKFKGKDE VSFALGSDTL QNYIRSVTYN  360
DDTFMTTTSK SNTNNGRKNM RGKAVIVSAS GYDKIDDDNE CMYIVDGVMN LNLDKSATCV  420
SKSTSASGST VGSGSGVTEV DEPMADSWMV MHGCDEVMMK EIALLEMIAH GRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-452283302104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that recognizes the motif 5'-TAACGG-3' in the promoter of endosperm-induced genes (PubMed:27681170, PubMed:25194028, PubMed:19066902). Promotes vegetative-to-embryonic transition and the formation of somatic embryos from root explants in a WUS-independent manner but via the expression of embryonic genes (e.g. LEC1, LEC2, FUS3 and WUS) (PubMed:18695688). May play an important role during embryogenesis and seed maturation (PubMed:19066902, PubMed:25194028). Together with MYB115, activates the transcription of S-ACP-DES2/AAD2 and S-ACP-DES3/AAD3 thus promoting the biosynthesis of omega-7 monounsaturated fatty acid in seed endosperm (PubMed:27681170). Regulates negatively maturation genes in the endosperm (PubMed:25194028). {ECO:0000269|PubMed:18695688, ECO:0000269|PubMed:19066902, ECO:0000269|PubMed:25194028, ECO:0000269|PubMed:27681170}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00385DAPTransfer from AT3G27785Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by LEC2. {ECO:0000269|PubMed:25194028}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438673.10.0PREDICTED: myb-like protein Q
SwissprotQ9LVW40.0MY118_ARATH; Transcription factor MYB118
TrEMBLA0A3P6AHG50.0A0A3P6AHG5_BRACM; Uncharacterized protein
TrEMBLM4EW440.0M4EW44_BRARP; Uncharacterized protein
STRINGBra033027.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60522643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.10.0myb domain protein 118
Publications ? help Back to Top
  1. Troncoso-Ponce MA, et al.
    Transcriptional Activation of Two Delta-9 Palmitoyl-ACP Desaturase Genes by MYB115 and MYB118 Is Critical for Biosynthesis of Omega-7 Monounsaturated Fatty Acids in the Endosperm of Arabidopsis Seeds.
    Plant Cell, 2016. 28(10): p. 2666-2682
    [PMID:27681170]
  2. Ettaki H, et al.
    Overexpression of MYB115, AAD2, or AAD3 in Arabidopsis thaliana seeds yields contrasting omega-7 contents.
    PLoS ONE, 2018. 13(1): p. e0192156
    [PMID:29381741]