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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
RrC9393_p1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
MYB |
| Protein Properties |
Length: 473aa MW: 53468.2 Da PI: 7.5146 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC9393_p1 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 53.1 | 7.2e-17 | 230 | 276 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g WT +Ed ll ++v ++G+++W+ Ia++++ gR +kqc++rw+++l
RrC9393_p1 230 KGQWTSDEDRLLMQLVGLHGTKRWSQIAKMLQ-GRVGKQCRERWHNHL 276
799*****************************.*************97 PP
|
| 2 | Myb_DNA-binding | 54.6 | 2.5e-17 | 283 | 324 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
+ W++eEd +l++a+k+ G++ W+ Iar+++ gRt++ +k++w+
RrC9393_p1 283 DGWSEEEDRILIEAHKEIGNR-WAEIARKLP-GRTENTIKNHWN 324
56*******************.*********.***********8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010439 | Biological Process | regulation of glucosinolate biosynthetic process |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:1904095 | Biological Process | negative regulation of endosperm development |
| GO:2000692 | Biological Process | negative regulation of seed maturation |
| GO:0005634 | Cellular Component | nucleus |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 473 aa
Download sequence Send
to blast |
MHYPYLASVI FDDNVTLKDV HPSLTDDASF VQNVHHKPFH ANLDRSHVPS IINSDLCHQN 60
PILKISNATS DHIPNLNISP RHYDMQPHTF DSVSKYIFNG ITSSPCTEAF EAYLRGISSD 120
QDLFNMACNT SHPVESNDLP NISHVPIDNT MWDNNRNQGI NFGTESIFNL AMVDSYGAPK 180
PICILGANDD TTMNQHQNNQ IMIKADQIKK NKRFQMRRGS KLTRKTSIIK GQWTSDEDRL 240
LMQLVGLHGT KRWSQIAKML QGRVGKQCRE RWHNHLRPDI KKDGWSEEED RILIEAHKEI 300
GNRWAEIARK LPGRTENTIK NHWNATKRKQ HSRKFKGKDE VSFALGSDTL QNYIRSVTYN 360
DDTFMTTTSK SNTNNGRKNM RGKAVIVSAS GYDKIDDDNE CMYIVDGVMN LNLDKSATCV 420
SKSTSASGST VGSGSGVTEV DEPMADSWMV MHGCDEVMMK EIALLEMIAH GRI
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that recognizes the motif 5'-TAACGG-3' in the promoter of endosperm-induced genes (PubMed:27681170, PubMed:25194028, PubMed:19066902). Promotes vegetative-to-embryonic transition and the formation of somatic embryos from root explants in a WUS-independent manner but via the expression of embryonic genes (e.g. LEC1, LEC2, FUS3 and WUS) (PubMed:18695688). May play an important role during embryogenesis and seed maturation (PubMed:19066902, PubMed:25194028). Together with MYB115, activates the transcription of S-ACP-DES2/AAD2 and S-ACP-DES3/AAD3 thus promoting the biosynthesis of omega-7 monounsaturated fatty acid in seed endosperm (PubMed:27681170). Regulates negatively maturation genes in the endosperm (PubMed:25194028). {ECO:0000269|PubMed:18695688, ECO:0000269|PubMed:19066902, ECO:0000269|PubMed:25194028, ECO:0000269|PubMed:27681170}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by LEC2. {ECO:0000269|PubMed:25194028}. |
