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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
RrC935_p1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
NAC |
| Protein Properties |
Length: 338aa MW: 39256 Da PI: 4.873 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC935_p1 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 38.9 | 2.6e-12 | 174 | 276 | 2 | 114 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
p G++F+Pt e+ +Lk+k+ g+++++ v +e di+++ P+dLp + ee++wy+++ + k + + ++ W +d++v++ +++ v
RrC935_p1 174 PEGIHFRPTSLEMS-IFLKQKALGQPVTACIVPEERhDIFSIPPRDLPG--YPEERHWYYYCMKPKGQ----QD----PQSLWTRFREDTAVFDLEENCV 262
89**********97.9**********99977755556***********4..35789*******97754....33....3568************9***** PP
NAM 101 glkktLvfykgrap 114
g+k+ +++ + +++
RrC935_p1 263 GIKRRFTLTEREEE 276
******99965443 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 338 aa
Download sequence Send
to blast |
MAERSHEPEL KKQKLEQLQR KAYHSVLLAS KSEPSGTSHN KSQIIQKLMS EWNIDQETHI 60
SVSEKIDLSA NNATWSPNSV PNPDSLAGKR VHARFPNDEE DDSPTSKKIK LHKQAYDHVL 120
HAFNAESPAL SHSRTLIMRD LLEECNKAHI KTDPPLVEAF NTPKIVEPRS RLFPEGIHFR 180
PTSLEMSIFL KQKALGQPVT ACIVPEERHD IFSIPPRDLP GYPEERHWYY YCMKPKGQQD 240
PQSLWTRFRE DTAVFDLEEN CVGIKRRFTL TEREEESDDD IFLPDEEEPP VEEWFIREIS 300
LPSSVAVTDL VLCHVVLKMR KKTQDEEYYD EEDEEEDE
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC189456 | 4e-55 | AC189456.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073D09, complete sequence. |
