PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC9335_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

FAR1

Protein Properties

Length: 808aa MW: 91863.3 Da PI: 6.5104

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC9335_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.4	1e-22	51	134	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY+eYA++vGF +++++s++skr+g++++ + Cs+ g++++e ++ +r+ +tgCka l++k+++d++w+v+++++eHnH+++p RrC9335_p1 51 FYREYARSVGFGITIKASRRSKRSGKFIDVKIACSRFGTTKREPSA------PRSCPKTGCKAGLHMKRKEDERWVVNSFVKEHNHDICP 134 9*************************************999888......99*******************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-20	51	134	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.2E-23	214	309	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.916	500	536	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.1E-7	500	533	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.2E-5	511	538	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 808 aa Download sequence Send to blast
MEMDVEGVPI DLLSTSGGNV DESSSTLEHF ETVGEPRNGM EFESKEAAYY FYREYARSVG 60 FGITIKASRR SKRSGKFIDV KIACSRFGTT KREPSAPRSC PKTGCKAGLH MKRKEDERWV 120 VNSFVKEHNH DICPDDFYAS VRGKKNKPGG AKKGLQLALG DEDIKLMLEH FVEMQEKQPG 180 FFYAVDLDGE KKRVRNVFWL DVKGKQDYCS FSDVVLFDTF YVRSGGYRIP FAPFVGVNRH 240 RRYVLLGCAL IGEESESTYT WLFRTWVKAV GGGQAPGVMI TDQDKVLSDV VAEVLPSARH 300 CFCLWDVMSR IHEMVDPFVS RDDGFTECFR NCVNGSWTDE QFERSWSEMI GKFELNENEW 360 FHSLFNDRRK WAPHYSRGVC FAGLSGPERS GSIVSHFDTY MMNSEATTTF SDFFERYMKF 420 LQYRYDVEAK DDDNDSQSKQ PTLRSSLAFE KQLSLIYTDA AFKKFQAEVL GVVSCQLQKE 480 REDETTAIFR VEDFEKRQNF FVAVNKELLD ICCSCYLFEY QGFLCKHAIL VLQNSDASCI 540 PSKYILNRWS KKGNNREEKH GKHATVHNRM ARFDDLCKRF VKLGEVASLS DEAYKTALQF 600 LEKNLEKCVG VNSSPKFPSE SEKLMTSGSV GVENEGMLDC ASTLFRKKKS QKKRKAYYGP 660 EDVTNSSEEL RQETEHVISR APTFENCYIP QADIEGSELG SRAAAPLGMY YSSQQTIGFS 720 SVSSVQDGYY GHPATIQAMG NLHSVHGRMN QYETQPDIQG AFQGQSGFRG SAIRGCYDME 780 ETLHDMTMES SQFQGSGPSH PSDHRLSQ

Sequence ? help Back to Top

Protein Sequence Length: 808 aa Download sequence Send to blast

MEMDVEGVPI DLLSTSGGNV DESSSTLEHF ETVGEPRNGM EFESKEAAYY FYREYARSVG  60
FGITIKASRR SKRSGKFIDV KIACSRFGTT KREPSAPRSC PKTGCKAGLH MKRKEDERWV  120
VNSFVKEHNH DICPDDFYAS VRGKKNKPGG AKKGLQLALG DEDIKLMLEH FVEMQEKQPG  180
FFYAVDLDGE KKRVRNVFWL DVKGKQDYCS FSDVVLFDTF YVRSGGYRIP FAPFVGVNRH  240
RRYVLLGCAL IGEESESTYT WLFRTWVKAV GGGQAPGVMI TDQDKVLSDV VAEVLPSARH  300
CFCLWDVMSR IHEMVDPFVS RDDGFTECFR NCVNGSWTDE QFERSWSEMI GKFELNENEW  360
FHSLFNDRRK WAPHYSRGVC FAGLSGPERS GSIVSHFDTY MMNSEATTTF SDFFERYMKF  420
LQYRYDVEAK DDDNDSQSKQ PTLRSSLAFE KQLSLIYTDA AFKKFQAEVL GVVSCQLQKE  480
REDETTAIFR VEDFEKRQNF FVAVNKELLD ICCSCYLFEY QGFLCKHAIL VLQNSDASCI  540
PSKYILNRWS KKGNNREEKH GKHATVHNRM ARFDDLCKRF VKLGEVASLS DEAYKTALQF  600
LEKNLEKCVG VNSSPKFPSE SEKLMTSGSV GVENEGMLDC ASTLFRKKKS QKKRKAYYGP  660
EDVTNSSEEL RQETEHVISR APTFENCYIP QADIEGSELG SRAAAPLGMY YSSQQTIGFS  720
SVSSVQDGYY GHPATIQAMG NLHSVHGRMN QYETQPDIQG AFQGQSGFRG SAIRGCYDME  780
ETLHDMTMES SQFQGSGPSH PSDHRLSQ

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018441037.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X1
Refseq	XP_018441038.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X1
Refseq	XP_018441039.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X1
Refseq	XP_018441040.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X1
Swissprot	Q3EBQ3	0.0	FRS2_ARATH; Protein FAR1-RELATED SEQUENCE 2
TrEMBL	A0A397ZCM3	0.0	A0A397ZCM3_BRACM; Uncharacterized protein
STRING	Bo4g045820.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.3	0.0	FAR1-related sequence 2

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]