PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

M-type_MADS

Protein Properties

Length: 322aa MW: 36251 Da PI: 10.0985

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC9299_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	47.4	2.5e-15	10	50	2	42
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i n+s r+ t+ kR+ g+lKK +E+S+LC++++ ii+s+ RrC9299_p1 10 FIVNNSLRKATYKKRKRGLLKKVHEISTLCGINAGAIIYSP 50 799************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	6.6E-21	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	16.245	1	49	IPR002100	Transcription factor, MADS-box
CDD	cd00266	3.26E-15	2	85	No hit	No description
PRINTS	PR00404	1.2E-7	3	23	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.35E-22	3	95	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.2E-13	11	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-7	23	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MARKKVKLAF IVNNSLRKAT YKKRKRGLLK KVHEISTLCG INAGAIIYSP YDPTPEVWPS 60 VEGMNQVIAA FRNLPEIDRH NNMVNQREFI QQRITKADKL MRKQKKDNRE VKLTEDMYRF 120 LQMGQLTIPA GGHNDPSLVR DLNDLGYLVD QYRNSLNRRI QILEGGSDVE IGESSNVVAA 180 TAPATTVHGL GSSSSSAAAG ASLFNQMSLF PQNQQQFHQP YAPYALRFYE QARNQSQSLE 240 MMNMGYAANQ MGFPFMGNAH HYHQTHHHQP QQPRWFRGES STAPQQLQLF PGESSAVPPP 300 ATSGSVPPDA TTQNPTNNIW FR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	24	RKKVKLAFIVNNSLRKATYKKRK
2	15	24	LRKATYKKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269\|PubMed:16798889, ECO:0000305\|PubMed:26462908}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB608492	4e-61	AB608492.1 Raphanus sativus DNA, microsatellite locus RsSH024, cultivar: rat-tail radish.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018455838.1	0.0	PREDICTED: agamous-like MADS-box protein AGL80
Swissprot	Q9FJK3	3e-65	AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBL	A0A3P5ZG07	1e-117	A0A3P5ZG07_BRACM; Uncharacterized protein
STRING	Bra041022.1-P	1e-114	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM70	28	415

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	2e-56	AGAMOUS-like 80

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]