PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9281_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 392aa    MW: 44554.5 Da    PI: 7.3987
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9281_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.82.8e-09328383147
                      TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 
                      r+ WT+eE+e l+ +vk++  +      W++I ++      ++Rt+ ++k++w++ 
       RrC9281_p1 328 RLFWTPEEEEMLKVGVKKFSAEakknmPWRKILEMGEkvfhETRTPADLKDKWRNM 383
                      678*****************************99877*****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579037.2E-787139IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.107.2E-588134IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd154892.61E-589134No hitNo description
Gene3DG3DSA:1.10.10.602.8E-9323386IPR009057Homeodomain-like
PROSITE profilePS500908.258323384IPR017877Myb-like domain
SuperFamilySSF466894.86E-10326384IPR009057Homeodomain-like
SMARTSM007172.2E-4327386IPR001005SANT/Myb domain
PfamPF002492.7E-6331383IPR001005SANT/Myb domain
CDDcd116602.63E-10331384No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MRSKSFAVRS RPHRASRNSL DPYPSSPASL PGEANERFAS GVRHCDSGEA ADVETVPDSF  60
DERDVPSKKR HCLGASGTAR GGRLNLEACI VCDVSDERVS RCSGTDCFIW FHGKCLNPEL  120
SNSEDLAKTY CPYCWLRVLM MKHESVREKK AVGAENEERK SKDRSVDRTD VVRDQELRGE  180
NGVCSSEKEQ LQVEKDSDWL REEELPLTEE IDGQPQEDIE KFQNAEEDKV DGKTTSDQTT  240
GARGQGDVSG KEQDQIQQNE RPRRRRQLIL SDSEISSDES AKDRNKGNVA SPSGTMKNQQ  300
RKHSSTTNVV KSRTVSDTTY FNREQRKRLF WTPEEEEMLK VGVKKFSAEA KKNMPWRKIL  360
EMGEKVFHET RTPADLKDKW RNMMGGRGKK TN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937353e-56AB493735.1 Arabidopsis thaliana At5g03780 mRNA for hypothetical protein, partial cds, clone: RAAt5g03780.
GenBankAK1178773e-56AK117877.1 Arabidopsis thaliana At5g03780 mRNA for myb like protein, complete cds, clone: RAFL19-05-H14.
GenBankAY5195433e-56AY519543.1 Arabidopsis thaliana MYB transcription factor (At5g03780) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018483319.10.0PREDICTED: trichohyalin-like
TrEMBLA0A397Z3020.0A0A397Z302_BRACM; Uncharacterized protein
STRINGBra037494.1-P1e-159(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76601327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.24e-08MYB_related family protein