PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

ERF

Protein Properties

Length: 196aa MW: 21657.9 Da PI: 5.6904

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC9261_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.4	8.3e-19	33	82	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ykGVr++ +g+WvAeIr+p + r +r +lg+f+t eAa a++ a++kl+g RrC9261_p1 33 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSREAALAYDSAARKLYG 82 69**999.******8...3.35***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	3.95E-30	32	92	No hit	No description
SMART	SM00380	2.0E-34	33	96	IPR001471	AP2/ERF domain
Pfam	PF00847	4.2E-14	33	82	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.77E-21	33	92	IPR016177	DNA-binding domain
PROSITE profile	PS51032	21.983	33	90	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.1E-30	33	91	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.6E-10	34	45	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.6E-10	56	72	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MMVGANKKQR AVNASSRKGC MRGKGGPENA SCTYKGVRQR TWGKWVAEIR EPNRGARLWL 60 GTFDTSREAA LAYDSAARKL YGPEAHLNLP ESLRSYPEAA SPGPQVSQTP SSNMGEKSSE 120 ESPSSSNEMS SWGTRSEISW EHMNVDLPVT DDSSIWEEAT MSLGFPWVHK GDDDISLFNS 180 CISDGYSNWD SFHSQL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	9e-18	34	95	6	68	ATERF1
3gcc_A	9e-18	34	95	6	68	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269\|PubMed:11798174}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By high-salt stress. {ECO:0000269\|PubMed:11798174}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009104705.1	1e-134	PREDICTED: dehydration-responsive element-binding protein 2D-like
Refseq	XP_013737432.1	1e-134	dehydration-responsive element-binding protein 2D
Swissprot	Q9LQZ2	1e-112	DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBL	A0A397YQE1	1e-132	A0A397YQE1_BRACM; Uncharacterized protein
TrEMBL	M4CHR9	1e-132	M4CHR9_BRARP; Uncharacterized protein
STRING	Bra003752.1-P	1e-133	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5399	26	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75490.1	1e-109	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]