PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

HD-ZIP

Protein Properties

Length: 282aa MW: 31115 Da PI: 8.0122

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC9240_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.7	8.2e-18	126	180	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q Le+ F+ +++++ ++++ LA++l+L rqV vWFqNrRa+ k RrC9240_p1 126 RKKLRLTKQQSALLEDSFKVHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTK 180 788899***********************************************98 PP
2	HD-ZIP_I/II	122.5	2e-39	126	215	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+k+q++lLE+sF+ +++L+p++K+ lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke ++L+ +l RrC9240_p1 126 RKKLRLTKQQSALLEDSFKVHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQDLK-AL 215 69*************************************************************************************9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-16	115	176	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.811	122	182	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.46E-18	124	190	IPR009057	Homeodomain-like
SMART	SM00389	5.6E-15	124	186	IPR001356	Homeobox domain
CDD	cd00086	1.28E-15	126	183	No hit	No description
Pfam	PF00046	3.1E-15	126	180	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	157	180	IPR017970	Homeobox, conserved site
SMART	SM00340	1.1E-25	182	225	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	4.5E-10	182	216	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009735	Biological Process	response to cytokinin
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MGLDDSCNTG LVLGLGLSPT PNNYSHAIKK SSTTVEHHFY PSLTLSLSGE SYKTKTVEMT 60 DAGAGDQIFR QTSSHSGISS FSSGRVKRER EVFGGDVEEE AEETTERVVC SRVSDDHEDE 120 EGVSARKKLR LTKQQSALLE DSFKVHSTLN PKQKQVLARQ LNLRPRQVEV WFQNRRARTK 180 LKQTEVDCEF LKKCCETLTD ENRRLQKELQ DLKALKMSQP FYMHMPPATL TMCPSCERLS 240 GGAAGGGGGG TVAVDGETGK GAFSIVTKPR FYSHFTNPSA AC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	174	182	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00477	DAP	Transfer from AT4G37790	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ441254	0.0	AJ441254.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein HAT22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018447389.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT22
Swissprot	P46604	1e-159	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A3N6QDA5	1e-177	A0A3N6QDA5_BRACR; Uncharacterized protein
STRING	Bra011786.1-P	1e-176	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1671	28	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	1e-160	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]