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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
RrC921_p1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
MYB |
| Protein Properties |
Length: 323aa MW: 36375.1 Da PI: 8.2543 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC921_p1 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 61.2 | 2.2e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg WT+eEd +l+ +++q+G+++W++I++ g+ R++k+c++rw +yl
RrC921_p1 14 RGQWTPEEDNKLASYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYL 61
89********************************************97 PP
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| 2 | Myb_DNA-binding | 44.2 | 4.3e-14 | 68 | 110 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
g +++ E+ ++v+ + lG++ W++Ia ++ gRt++++k++w++
RrC921_p1 68 GQFSEAEEHIIVKFHSVLGNR-WSLIAVQLP-GRTDNDVKNYWNT 110
789******************.*********.***********97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 323 aa
Download sequence Send
to blast |
MGRIPCCEKE NVKRGQWTPE EDNKLASYIA QHGTRNWRLI PKNAGLQRCG KSCRLRWTNY 60
LRPDLKHGQF SEAEEHIIVK FHSVLGNRWS LIAVQLPGRT DNDVKNYWNT KLKKKLSGMG 120
IDPVTHKPFS HLMAEITTTL NPPQVSHLAE AALGCFKDEM LHLLTKKRVD LNQINFSSPN 180
PNPNKFNRTV DNEAGKMKMD GMENGNGIMK LWDMGNGFSY GSSSSSFGNE EKNDGPAFPA 240
VAAWRGHGGI RTAVAETAAA EEEERRRKLK GEVVDQEEIG SLGARGDGML MMRSHHDQNQ 300
HHVFNVDNVL WDLQADDLIN HVV
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that binds to the DNA sequence 5'-CCAACC-3'. Regulates directly PME5, UND and GLOX1 (PubMed:21673079). Essential for tapetum development in anthers and microsporogenesis (PubMed:12848824, PubMed:21673079). Regulates the timing of tapetal programmed cell death (PCD) which is critical for pollen development. May act through the activation of UND, encoding an A1 aspartic protease (PubMed:21673079). Required for anther development by regulating tapetum development, callose dissolution and exine formation. Acts upstream of A6 and FAR2/MS2, two genes required for pollen exine formation (PubMed:17727613). Negatively regulates trichome endoreduplication and trichome branching (PubMed:12848824). {ECO:0000269|PubMed:12848824, ECO:0000269|PubMed:17727613, ECO:0000269|PubMed:21673079}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY519639 | 0.0 | AY519639.1 Arabidopsis thaliana MYB transcription factor (At5g56110) mRNA, complete cds. |
| Publications
? help Back to Top |
- Li SF,Iacuone S,Parish RW
Suppression and restoration of male fertility using a transcription factor.
Plant Biotechnol. J., 2007. 5(2): p. 297-312
[PMID:17309685] - Qian H, et al.
Trace concentrations of imazethapyr (IM) affect floral organs development and reproduction in Arabidopsis thaliana: IM-induced inhibition of key genes regulating anther and pollen biosynthesis.
Ecotoxicology, 2015. 24(1): p. 163-71
[PMID:25348600] - Xiong SX, et al.
The transcription factors MS188 and AMS form a complex to activate the expression of CYP703A2 for sporopollenin biosynthesis in Arabidopsis thaliana.
Plant J., 2016. 88(6): p. 936-946
[PMID:27460657] - Verma N,Burma PK
Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
Plant J., 2017. 92(3): p. 481-494
[PMID:28849604] - Li DD,Xue JS,Zhu J,Yang ZN
Gene Regulatory Network for Tapetum Development in Arabidopsis thaliana.
Front Plant Sci, 2017. 8: p. 1559
[PMID:28955355]
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