PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9170_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 580aa    MW: 63242.6 Da    PI: 5.6706
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9170_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS447.77.7e-1372155751374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppset.seknsseelaalklfsevsPilkfshlta 98 
                 lv++L++cAeav+s++l+la+al++++  la +++ +m+++a+yf+eALa+r++r        l+p +t  +++ s++l++   f+e++P+lkf+h+ta
  RrC9170_p1 215 LVHALMACAEAVQSSNLTLAEALVKQIGFLAVSQAGAMRKVATYFAEALARRIYR--------LSPPQTqIDHSLSDTLQM--HFYETCPYLKFAHFTA 303
                 689****************************************************........444444043445555444..5*************** PP

        GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 NqaIlea+eg++rvH+iDf+++qGlQWpaL+qaLa R++gpps+R+Tg+g+p++++++ l+e+g +La++Ae+++v+fe++ +va++l+dl+  +L+++
  RrC9170_p1 304 NQAILEAFEGKKRVHVIDFSMNQGLQWPALMQALALREGGPPSFRLTGIGPPAADNSDHLHEVGCKLAQLAEAIHVEFEYRGFVANSLADLDAAMLELR 402
                 *************************************************************************************************** PP

        GRAS 198 p..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                 p   Ea+aVn+v++lh+ll +++++e+    v  +vk+++P +++vveqe++hn++ Fl+rf+e+l+yys+lfdsle      s++++++++++lg++i
  RrC9170_p1 403 PseTEAVAVNSVFELHKLLGRPGAIEK----VFGVVKQIKPVIFTVVEQESSHNGPVFLDRFTESLHYYSTLFDSLEGA---PSSQDKVMSEVYLGKQI 494
                 9999*********************99....*********************************************999...79999************ PP

        GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +n+vacega+r+erhetl++W++r++++GF p++l+++a kqa++ll+ ++ ++gyrvee++g+l+lgW++rpL+++SaW+
  RrC9170_p1 495 CNLVACEGADRVERHETLSQWSNRFGSSGFAPAHLGSNAFKQASTLLALFNgGEGYRVEENNGCLMLGWHTRPLITTSAWK 575
                 ********************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011292.1E-3943116No hitNo description
PfamPF120419.9E-3343110IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098566.035189554IPR005202Transcription factor GRAS
PfamPF035142.7E-134215575IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MKRDLHQFQA PNHGTSIPGS STSSPAVFGK DKMMMVKEEE EDDELLGVLG YKVRSSEMAE  60
VALKLEQLET MMGNVQEDGL AHLATDTVHY NPAELYSWLD NMLTELNPPA ATGSNGLNQI  120
NNSFFTGGGD YDLKAIPGSA ICRRSNQFGI DSSSSSPNQY NKRLKPCPSP ESMVTSPSPA  180
VQIGGIVGTT VTTTTVSEST RPLILVDSQD NGVRLVHALM ACAEAVQSSN LTLAEALVKQ  240
IGFLAVSQAG AMRKVATYFA EALARRIYRL SPPQTQIDHS LSDTLQMHFY ETCPYLKFAH  300
FTANQAILEA FEGKKRVHVI DFSMNQGLQW PALMQALALR EGGPPSFRLT GIGPPAADNS  360
DHLHEVGCKL AQLAEAIHVE FEYRGFVANS LADLDAAMLE LRPSETEAVA VNSVFELHKL  420
LGRPGAIEKV FGVVKQIKPV IFTVVEQESS HNGPVFLDRF TESLHYYSTL FDSLEGAPSS  480
QDKVMSEVYL GKQICNLVAC EGADRVERHE TLSQWSNRFG SSGFAPAHLG SNAFKQASTL  540
LALFNGGEGY RVEENNGCLM LGWHTRPLIT TSAWKLSAVH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-6222257426378Protein SCARECROW
5b3h_A3e-6222257425377Protein SCARECROW
5b3h_D3e-6222257425377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. {ECO:0000269|PubMed:15734906}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9285490.0AY928549.1 Brassica rapa DELLA protein (RGA1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018483997.10.0PREDICTED: LOW QUALITY PROTEIN: DELLA protein RGA1
SwissprotQ5BN230.0RGA1_BRACM; DELLA protein RGA1
TrEMBLA0A3P6EEM40.0A0A3P6EEM4_BRAOL; Uncharacterized protein
STRINGBo7g078550.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein