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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC9163_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | CPP | ||||||||
Protein Properties | Length: 604aa MW: 67182.6 Da PI: 7.9581 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 30.8 | 6e-10 | 349 | 374 | 15 | 40 |
TCR 15 kkYCeCfaagkkCseeCkCedCkNke 40 +YCeCfaag++C e C+C dC+Nk RrC9163_p2 349 ENYCECFAAGVYCIEPCSCVDCFNKP 374 68**********************96 PP | |||||||
2 | TCR | 46.4 | 7.7e-15 | 421 | 459 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+ CnCkks+ClkkYCeCf++g+ Cs +C+ e+CkN RrC9163_p2 421 RHKRVCNCKKSNCLKKYCECFQSGVGCSINCRYEGCKNA 459 58999*********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51634 | 29.735 | 341 | 461 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.6E-6 | 349 | 373 | IPR005172 | CRC domain |
SMART | SM01114 | 2.6E-4 | 350 | 376 | IPR033467 | Tesmin/TSO1-like CXC domain |
SMART | SM01114 | 5.2E-13 | 421 | 462 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 2.9E-10 | 424 | 459 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 604 aa Download sequence Send to blast |
DSPVFNFINN LSPIEAVRSI STAHTFNSLC FTSPPPVFTS PHPTFHRESR FFSWYNRLSF 60 FNQSSCSSCF SIGWFCIVVS VSKEEVEDLN KDASLEEEEE EMSSELPHIL NDSPCMPNLS 120 EPPPGESVSY SEDFKVSLLK LLDAQEENDT PARRRLISDA AELLVFRSPC DSEAFQCLVD 180 TVSSSERRSS QTKQHDVTKD VQANGYCNDN EPLAVGTNQV NTGIHPVPSL HRGSMRRRCL 240 DFEGTGKRKK DDQQTVYDNK AESSSKHVAP GIGLHLNAIA MVSRDSKINV RLTSGAIQKS 300 FSDSNTPVQS QDSLLESLDQ GEHEPGEESA VEELNPGSLR KKQAFLLQEN YCECFAAGVY 360 CIEPCSCVDC FNKPIHEDTV LATRKQIESR NPLAFAPKVI RNSDSITEVG DDASKTPASA 420 RHKRVCNCKK SNCLKKYCEC FQSGVGCSIN CRYEGCKNAF GRKDANKRRI TRNMSEVHQK 480 YKKIKKSSRT QPFLSKNRLP PTQFFLGAGS SSFRKPDSDL TQSRNEKKPL DTVTEEKTEN 540 MPDILSINPI TTIKAIPPNS KRVSPPQPGS SEAGSVLVKR SNGRKLILRS IPAFPSLNPK 600 KSVK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 235 | 249 | RRRCLDFEGTGKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable floral-specific cell division component, required for proper organ formation in flowers. Regulates the floral meristem cell division and the inflorescence meristem organization. Plays a role in development of both male and female reproductive tissues. {ECO:0000269|PubMed:10769244, ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:9043081, ECO:0000269|PubMed:9725857}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF205142 | 1e-107 | AF205142.1 Arabidopsis thaliana CXC domain containing TSO1-like protein 1 (SOL1) mRNA, complete cds. | |||
GenBank | AY099653 | 1e-107 | AY099653.1 Arabidopsis thaliana unknown protein (At3g22760) mRNA, complete cds. | |||
GenBank | AY128837 | 1e-107 | AY128837.1 Arabidopsis thaliana unknown protein (At3g22760) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013587689.1 | 0.0 | PREDICTED: CRC domain-containing protein TSO1 | ||||
Refseq | XP_022557925.1 | 0.0 | CRC domain-containing protein TSO1-like | ||||
Swissprot | Q9LUI3 | 0.0 | TSO1_ARATH; CRC domain-containing protein TSO1 | ||||
TrEMBL | A0A078IU52 | 0.0 | A0A078IU52_BRANA; BnaCnng27630D protein | ||||
TrEMBL | A0A0D3CH36 | 0.0 | A0A0D3CH36_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6EKS8 | 0.0 | A0A3P6EKS8_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g094500.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1467 | 28 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22780.1 | 0.0 | Tesmin/TSO1-like CXC domain-containing protein |
Publications ? help Back to Top | |||
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