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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC9115_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 221aa MW: 25337.4 Da PI: 5.2088 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 98.2 | 1.2e-30 | 45 | 171 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGf F+Ptde+ + +yLk kv +++++ ++i+++diyk++PwdL ++ ++++ewyfF++ +++y++g r++r t +g+W+ ++ke ++ ++ RrC9115_p1 45 LPPGFLFRPTDEQTLFYYLKGKVLSEEVT--DAIADLDIYKHDPWDLAgHSKLKSTEEWYFFTNLQSRYKSGPRTKRDTPHGRWRRGSRKKEFKDPNSD 141 79***********************9954..58**************8433334567****************************************** PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 l+g+k f+ ++ k e ++W m+e++l RrC9115_p1 142 LKGTKMPYSFFLKNGTKEEPSEWRMEEFKL 171 ***********99999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.05E-33 | 40 | 184 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 34.054 | 45 | 219 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.7E-15 | 46 | 171 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MEPEYEANPV SLPPMDVADP VSTQPPPPPV NISSAEETFQ LTVSLPPGFL FRPTDEQTLF 60 YYLKGKVLSE EVTDAIADLD IYKHDPWDLA GHSKLKSTEE WYFFTNLQSR YKSGPRTKRD 120 TPHGRWRRGS RKKEFKDPNS DLKGTKMPYS FFLKNGTKEE PSEWRMEEFK LENHSGMCVS 180 KVFRNKKEMV EQTTTPQGEI PSSSSDDEDA TSLLRIPQAQ L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-16 | 36 | 171 | 6 | 140 | Stress-induced transcription factor NAC1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010445665.1 | 4e-54 | PREDICTED: NAC domain-containing protein 86-like | ||||
STRING | XP_010445665.1 | 1e-53 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10490.1 | 8e-29 | NAC domain containing protein 52 |