PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9105_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 580aa    MW: 66138.9 Da    PI: 5.6015
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9105_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS391.59.4e-1202055751374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 +++lL++cA+av+s d++ a + L++++ ++s++gd++qRl  +f+eAL+ar+++    ++k+  + + s +++ + l+a+k f++++P+l +++ taN
  RrC9105_p2 205 MRNLLMQCAQAVASFDQKTAAEKLEEIRAHSSSHGDANQRLGYHFAEALEARITG----TMKTPISATFSGTSMFDILTAYKEFVQACPTLIMCYYTAN 299
                 579****************************************************....5555556666667799************************ PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 ++I e +++++++HiiDf+i +G+QWp+L++aL+ Rp+gpp+lR+Tg++ p++g   +e++eetg+rL++f+++++vpfe+n+ +ak++e+++l+eL +
  RrC9105_p2 300 RTIIELASKATTLHIIDFGILYGFQWPCLIKALSRRPGGPPMLRVTGIELPQPGfrPSERVEETGRRLKRFCDKFKVPFEYNF-IAKNWETITLDELVI 397
                 *****************************************************9*****************************.7************** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 ++gE+++Vn++l+l++++de+vsl+s+rd+ Lkl+++++P+++v++e   ++ns+ Fl+rf eal ++s+lfd++ +++++e++ r+ vErel+ r+++
  RrC9105_p2 398 NSGETTVVNCILRLQYTPDETVSLDSPRDTALKLFRDINPDLFVFAEIHGKYNSPFFLTRFREALFHCSSLFDMFGTTISEENNCRTLVERELIIRDAM 496
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +v+aceg+er++r et+++W+ r+ +aGF+p++l++++ k+ k l+r+ + + + ++++++++++gWk+r L+++S+W+
  RrC9105_p2 497 SVIACEGSERFARPETYKQWQVRILRAGFRPAKLNKEIIKEGKELIRERYHKDFVIDSDNHWMFQGWKGRVLYALSCWK 575
                 **************************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.144179555IPR005202Transcription factor GRAS
PfamPF035143.2E-117205575IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MDTILQVPAD GFKFDNSSGS CCKPRNNLES GTKIFTCFYE SKNPSPTEST ESQNPSPTES  60
TECSEYHPVL KYINDMLMEE DLEGQSCMSE DSLALQAAER SFFEVLQEGQ TPPPSMTTLL  120
QPTSEESTRR YRLRDDDEEH DLESGRRSKL PAISTVDELA ENMEEVLLVC QNNNHGGEAT  180
RNEPGREKGS SNRTKPRKSD QGVDMRNLLM QCAQAVASFD QKTAAEKLEE IRAHSSSHGD  240
ANQRLGYHFA EALEARITGT MKTPISATFS GTSMFDILTA YKEFVQACPT LIMCYYTANR  300
TIIELASKAT TLHIIDFGIL YGFQWPCLIK ALSRRPGGPP MLRVTGIELP QPGFRPSERV  360
EETGRRLKRF CDKFKVPFEY NFIAKNWETI TLDELVINSG ETTVVNCILR LQYTPDETVS  420
LDSPRDTALK LFRDINPDLF VFAEIHGKYN SPFFLTRFRE ALFHCSSLFD MFGTTISEEN  480
NCRTLVEREL IIRDAMSVIA CEGSERFARP ETYKQWQVRI LRAGFRPAKL NKEIIKEGKE  540
LIRERYHKDF VIDSDNHWMF QGWKGRVLYA LSCWKPAKKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-441955769380Protein SCARECROW
5b3h_A1e-441955768379Protein SCARECROW
5b3h_D1e-441955768379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018433919.10.0PREDICTED: scarecrow-like protein 30
SwissprotQ9SNB80.0SCL30_ARATH; Scarecrow-like protein 30
TrEMBLA0A0D3A8U70.0A0A0D3A8U7_BRAOL; Uncharacterized protein
STRINGBo1g070830.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36462561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46600.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]