 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
RrC9027_p1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
GATA |
| Protein Properties |
Length: 228aa MW: 25264.5 Da PI: 10.5294 |
| Description |
GATA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC9027_p1 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GATA | 56.6 | 3.6e-18 | 160 | 194 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
C++C +tkTp+WR+gp g+ktLCnaCG+++r+ +l
RrC9027_p1 160 CTHCEATKTPQWREGPCGPKTLCNACGVRFRSGRL 194
*******************************9986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 228 aa
Download sequence Send
to blast |
DVLTSFSSQF TTSHGRASKG VQRKKPVPTL KQSSSSEVSS TIDSCLYDVK VSTLFQSSNA 60
VSVLENGSVS FQNPIQRLAF PVKGTRSKLR KRPTPPTFRS LKSFASEMVQ QFASPDYDSG 120
SETYHLPSDN APKKKRQKKN NKSDSDTPEA FNADGTIRMC THCEATKTPQ WREGPCGPKT 180
LCNACGVRFR SGRLLPEYRP SSSPSFIPSL HSNSHRKIIE MRMKDKPG
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 131 | 138 | PKKKRQKK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
