PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9010_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 976aa    MW: 108971 Da    PI: 4.9764
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9010_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.71.7e-15198251356
                 XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                 ++k+ rr+ +NRe+ArrsR+RK++++  Le+ v eL++e ++L k+l++++ ++
  RrC9010_p1 198 DVKKSRRMLSNRESARRSRRRKQEQTCDLETQVNELKGEHSSLLKQLSNMNHKY 251
                 789*****************************************8888887665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.8E-19196260IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.1E-11197250No hitNo description
PROSITE profilePS5021710.944198252IPR004827Basic-leucine zipper domain
PfamPF001701.0E-13198252IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.19E-11199250No hitNo description
PROSITE patternPS000360203218IPR004827Basic-leucine zipper domain
PfamPF124981.2E-12267356IPR020983Basic leucine-zipper, C-terminal
PROSITE profilePS5094234.93407543IPR013809ENTH domain
Gene3DG3DSA:1.25.40.901.1E-38413535IPR008942ENTH/VHS
SMARTSM002733.4E-50413543IPR013809ENTH domain
PfamPF076513.4E-98414706IPR011417AP180 N-terminal homology (ANTH) domain
SuperFamilySSF484644.49E-31414536IPR008942ENTH/VHS
CDDcd035642.64E-37415535No hitNo description
SuperFamilySSF890094.71E-38576706No hitNo description
Gene3DG3DSA:1.20.58.1504.7E-32582707IPR014712Phosphoinositide-binding clathrin adaptor, domain 2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048268Biological Processclathrin coat assembly
GO:0030136Cellular Componentclathrin-coated vesicle
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005545Molecular Function1-phosphatidylinositol binding
GO:0030276Molecular Functionclathrin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 976 aa     Download sequence    Send to blast
MNSIFSIDDF SDPFWESSPP LDSDSAKVVT ADEWTVEMFL EEIASSVSSE PVGNNNEKNN  60
NNAIVGVSSA QSLPSVSGQN DFEEDSRFRR DSDEYRRVLE NKLETDCATV VALRAGSVKP  120
EDSTGSPETL FPPAQSSPLT QGSLVTPGEV GVTSSLLAEV KKTGVPIKQV TSGSSRDYSD  180
DDDLDEENET TGSLKPEDVK KSRRMLSNRE SARRSRRRKQ EQTCDLETQV NELKGEHSSL  240
LKQLSNMNHK YDDAAVGNRI LKADIETLRA KVKMAEETVK RVTGMNPMLL GRSNGHINNN  300
RMPLTGNTRM ASSCLPPFQP QSNLNMGGLP TIPSPRLENS FIPTPSLNSQ TNSHLQRIRN  360
TQTHHPAPTT NPYGWTTETQ NDSACKLRRA IGAVKDQTSV GLARVGGRSN SLTELEVAIV  420
KATRHDEYPA EEKYVREILS LTSYSRNYVN ACVSILSRRL NRTKNWSVAL KTLILIQRML  480
TQGDKAYEEE IFFATRRGSR LLNMSDFRDA DGSGSWDYSA FVRTYALYLD ERLDFRMQRR  540
KGKNIEGGDD DDSGDDDHRE TKTDNRSRAL VVTPKPVTKM KTERIFIRVQ HLQQLLDRFL  600
ACRPTGNAKN NRVVIVALYP IVKDSFQIYC NITEIMAVLI DRFMELDVHD SIKVYDIFCR  660
VSKQLDELDP FHGWCKKMGV ARSSEYPELE KITKKKLDIM DEFIRDKSVL AAQALKSPSR  720
KSNRSEEEEI KDIQEDLNSI KALPAPSQEE DEEEKEETET KKDVQEVVSR QDQEGDLLDL  780
TGEAGDTTWS VGDSLALALF DGAVETEAVS GPGWEAFDDD SADWETALVK SATRLSAQKS  840
ELGGGFDRLL LDGMYQYGAV NASTAYGSYG SASSVAFGSA GRPAASMLAL PAPPPMANGN  900
GGRDLMTMDP FAASLEVAPP SYVQMSDMEK KQRLVMEEQM MWDQYNRTGR LGHMQNQQQH  960
FQVPYSMGPY SYTPHY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212219RRSRRRKQ
2214219SRRRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018452027.10.0PREDICTED: putative clathrin assembly protein At4g02650
SwissprotQ8GX470.0CAP3_ARATH; Putative clathrin assembly protein At4g02650
TrEMBLA0A0D3E0410.0A0A0D3E041_BRAOL; Uncharacterized protein
TrEMBLA0A3P6D9G60.0A0A3P6D9G6_BRAOL; Uncharacterized protein
STRINGBo9g005970.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02640.21e-176bZIP family protein