 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
RrC8984_p1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
NAC |
| Protein Properties |
Length: 431aa MW: 48571.8 Da PI: 7.0638 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC8984_p1 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 127.2 | 1.3e-39 | 6 | 137 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkya..tgkrknratksgyWkatgkdkevlsk.. 95
+G+rF+Pt ee++++yLk+k+ +k+ ++e+i+e++i+ ++P++Lp +k+++++ wyfF++r+ +++ ++k ++r+t sgyWkatg d++v++k
RrC8984_p1 6 VGYRFSPTGEEVINYYLKNKILDKPWLVNEAINEINICAYDPESLPslSKLESKDLVWYFFTPREYHASekKKKGTKRTTPSGYWKATGVDRKVKDKrg 104
7************************999899***************5447777888********98877224567899******************977 PP
NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
+g ++g+kktLv+++g++ +g+ t Wvmhey++
RrC8984_p1 105 NGVEIGIKKTLVYHHGKSANGVWTPWVMHEYHI 137
7788***************************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 431 aa
Download sequence Send
to blast |
MERNLVGYRF SPTGEEVINY YLKNKILDKP WLVNEAINEI NICAYDPESL PSLSKLESKD 60
LVWYFFTPRE YHASEKKKKG TKRTTPSGYW KATGVDRKVK DKRGNGVEIG IKKTLVYHHG 120
KSANGVWTPW VMHEYHITSL PPTQRNYVIC QVMYKGADGD SLYGNNSNEL VSASNTGRVI 180
NTAPEAEQRR DKDLYISVDD LANPLNEQDD VSLFNPDTIF NDSYCPYLQP QAPWDDDYIN 240
ELLSFNGGNH TDVLGDLDIT MQEHRNDHRP KKALTGIIVG CSSDSDDAES ISATSYQGTS 300
SPDSFHSLSG KFHSSADEIP SLRKDSVTDI QLPAETSING KTRKSRRTIP SKLEVKEGKP 360
KVINASMEKK SSASLSILKT EKMGWFITEE PVDRRTRKNP PYIYLMNMII GFILLMAVIS 420
NLISVLQSVK T
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-21 | 7 | 155 | 20 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-21 | 7 | 155 | 20 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-21 | 7 | 155 | 20 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-21 | 7 | 155 | 20 | 165 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 2e-21 | 7 | 155 | 23 | 168 | NAC domain-containing protein 19 |
| 3swm_B | 2e-21 | 7 | 155 | 23 | 168 | NAC domain-containing protein 19 |
| 3swm_C | 2e-21 | 7 | 155 | 23 | 168 | NAC domain-containing protein 19 |
| 3swm_D | 2e-21 | 7 | 155 | 23 | 168 | NAC domain-containing protein 19 |
| 3swp_A | 2e-21 | 7 | 155 | 23 | 168 | NAC domain-containing protein 19 |
| 3swp_B | 2e-21 | 7 | 155 | 23 | 168 | NAC domain-containing protein 19 |
| 3swp_C | 2e-21 | 7 | 155 | 23 | 168 | NAC domain-containing protein 19 |
| 3swp_D | 2e-21 | 7 | 155 | 23 | 168 | NAC domain-containing protein 19 |
| 4dul_A | 1e-21 | 7 | 155 | 20 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 1e-21 | 7 | 155 | 20 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269|PubMed:21450938}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269|PubMed:21450938}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ420439 | 0.0 | KJ420439.1 Brassica napus NAC transcription factor 69-1 (NAC69-1.1) mRNA, complete cds. |
