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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
RrC895_p1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
MYB_related |
| Protein Properties |
Length: 392aa MW: 44251.7 Da PI: 8.5547 |
| Description |
MYB_related family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC895_p1 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 55 | 1.9e-17 | 47 | 91 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
r rWT eE+e++v+a k++G W++I +++g ++++ q++s+ qk+
RrC895_p1 47 RERWTDEEHEKFVEALKLYGRA-WRKIQEHVG-TKSAVQIRSHAQKF 91
78******************88.*********.************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0007623 | Biological Process | circadian rhythm |
| GO:0009734 | Biological Process | auxin-activated signaling pathway |
| GO:0010600 | Biological Process | regulation of auxin biosynthetic process |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 392 aa
Download sequence Send
to blast |
MTLTANLKGA NRVEEETEDK QQIQQLSDQV FDYAPKVRKP YTITKERERW TDEEHEKFVE 60
ALKLYGRAWR KIQEHVGTKS AVQIRSHAQK FFSKFVLLCF TQVAREAYGG NGNSLEPVVI 120
PPPRPKRKPM HPYPRKLGNE GDHKRRSVSP SERDNRSPTS VLSLSTTGSE AMGSSDSYSH 180
NRSLSPVSSA SPQAALPTTA PEELETLKLE LFSRERLLKR ESSIKEPAKQ SLKLFGKTVL 240
VSDLDMSSSL TTSTTYCKSP IQPLPRKLSR SETFSMVTIP QEELLSCWIQ VSPKKEELEN 300
RCLDSEKAVQ NEGSSTGSNT GSLDDTGHTE KSSEPETMVC QREFKPSERS AFSELRRANS 360
ESNSRGFGPY KKRKMGTEAE EEQDQQEIRL CL
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Morning-phased transcription factor integrating the circadian clock and auxin pathways. Binds to the evening element (EE) of promoters. Does not act within the central clock, but regulates free auxin levels in a time-of-day specific manner. Positively regulates the expression of YUC8 during the day, but has no effect during the night. Negative regulator of freezing tolerance. {ECO:0000269|PubMed:19805390, ECO:0000269|PubMed:23240770}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Down-regulated and strongly decreased amplitude of circadian oscillation upon cold treatment. {ECO:0000269|PubMed:19805390, ECO:0000269|PubMed:23240770}. |
