PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8915_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family DBB
Protein Properties Length: 231aa    MW: 25685.5 Da    PI: 5.7559
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8915_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.91.3e-05533634
    zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeH 34
                C+ ++++e++ fC  ++  lC+ C  + H
  RrC8915_p2  5 CDMCDKEEASVFCCADEAALCNGCDHHVH 33
                *************************9988 PP
2zf-B_box29.21.9e-095592338
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                ++ C+ ++e ++ lfC++++  lC++C   +H+   Ht
  RrC8915_p2 55 APLCDICGERRALLFCQEDRAILCRECDIPIHQAneHT 92
                789*****************************767876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.556147IPR000315B-box-type zinc finger
SMARTSM003368.8E-5447IPR000315B-box-type zinc finger
CDDcd000211.34E-4533No hitNo description
SMARTSM003366.3E-1653100IPR000315B-box-type zinc finger
PROSITE profilePS5011910.18253100IPR000315B-box-type zinc finger
PfamPF006436.9E-85593IPR000315B-box-type zinc finger
CDDcd000212.75E-1056100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MKIWCDMCDK EEASVFCCAD EAALCNGCDH HVHFANKLAG KHLRFSLTSP TFKDAPLCDI  60
CGERRALLFC QEDRAILCRE CDIPIHQANE HTKKHNRFLL TGIKLSSSPS SYPTTASNSN  120
SAVALGRAKT RPKSVWGEVP SSASSEVFGS SHSTTTSNYY YGLEEQASDS CSGSISEYLM  180
ETLPGWRVED LLEDPACVSY DDIFTNNNKN GVYHGSSQYE HQGFWEQKPF S
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469139.11e-168PREDICTED: B-box zinc finger protein 20-like
SwissprotQ0IGM71e-128BBX20_ARATH; B-box zinc finger protein 20
TrEMBLA0A398AGZ81e-135A0A398AGZ8_BRACM; Uncharacterized protein
TrEMBLM4D5X21e-135M4D5X2_BRARP; Uncharacterized protein
STRINGBra011879.1-P1e-136(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65972743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.11e-114DBB family protein
Publications ? help Back to Top
  1. Wei CQ, et al.
    The Arabidopsis B-box protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis.
    J Genet Genomics, 2016. 43(9): p. 555-563
    [PMID:27523280]
  2. Thussagunpanit J, et al.
    Involvement of STH7 in light-adapted development in Arabidopsis thaliana promoted by both strigolactone and karrikin.
    Biosci. Biotechnol. Biochem., 2017. 81(2): p. 292-301
    [PMID:27858514]