PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

RrC887_p5

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

G2-like

Protein Properties

Length: 454aa MW: 50430.4 Da PI: 7.0836

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC887_p5	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	50.8	3.8e-16	3	45	2	46
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehv 46 +r+rWt++LH +Fv+ave LGG e+A Pk++l+l+ k Ltl+hv RrC887_p5 3 ARMRWTTTLHGCFVHAVELLGGLERAKPKSVLKLV--KYLTLAHV 45 69*******************************96..56888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.7E-13	3	45	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-9	3	45	IPR006447	Myb domain, plants
SuperFamily	SSF46689	2.51E-5	4	45	IPR009057	Homeodomain-like
Pfam	PF03080	1.2E-37	113	218	IPR004314	Domain of unknown function DUF239
Pfam	PF03080	5.5E-33	294	424	IPR004314	Domain of unknown function DUF239

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MGARMRWTTT LHGCFVHAVE LLGGLERAKP KSVLKLVKYL TLAHVICVTV AMSTPTPVLT 60 INETPTGHMV QKEENSAWQV WHRRSRACPR GSIPYATAYV NSKPKIYGTK ATINVWDPIV 120 QASGDFSLAQ IWLSSGSYET NDLNTIEVGW QVFPSKYGDA QPRLFTYWTT DAYYSGCYSL 180 RCPGFLQTSS RIALEAAISR TSTYGGDQSG ITIQIWKADI TFYTNTIPTL HSGILAGFSL 240 RGPLLDGSQQ RPLPLLRTDG KISTIRKELD HMSARAVDEA RIRVDINGLL PLETTMEIPL 300 PTNEDPISGN WWLAVGVVTF EPVGYWPAEL FTTMSDHATM VEWGGEIFYQ NISGLRTITQ 360 MGSGEYAEKG YRKSAYFCNL NIAEEPNSLQ PVDDFNMQAD HKDLYTITKS NTEACGNHFY 420 FGGPGYGHVR STAVRGAASL VLLFSTVFLG LWFL

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MGARMRWTTT LHGCFVHAVE LLGGLERAKP KSVLKLVKYL TLAHVICVTV AMSTPTPVLT  60
INETPTGHMV QKEENSAWQV WHRRSRACPR GSIPYATAYV NSKPKIYGTK ATINVWDPIV  120
QASGDFSLAQ IWLSSGSYET NDLNTIEVGW QVFPSKYGDA QPRLFTYWTT DAYYSGCYSL  180
RCPGFLQTSS RIALEAAISR TSTYGGDQSG ITIQIWKADI TFYTNTIPTL HSGILAGFSL  240
RGPLLDGSQQ RPLPLLRTDG KISTIRKELD HMSARAVDEA RIRVDINGLL PLETTMEIPL  300
PTNEDPISGN WWLAVGVVTF EPVGYWPAEL FTTMSDHATM VEWGGEIFYQ NISGLRTITQ  360
MGSGEYAEKG YRKSAYFCNL NIAEEPNSLQ PVDDFNMQAD HKDLYTITKS NTEACGNHFY  420
FGGPGYGHVR STAVRGAASL VLLFSTVFLG LWFL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009123613.1	1e-168	PREDICTED: uncharacterized protein LOC103848466 isoform X1

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	3e-14	G2-like family protein