PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8843_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 323aa    MW: 35517.9 Da    PI: 9.4338
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8843_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.84.5e-1260104147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+ E++++++a +++  + Wk+I + +g  ++  q++s+ qky
       RrC8843_p1  60 RESWTEPEHDKFLEALHLFDRD-WKKIEAFIG-SKSVIQIRSHAQKY 104
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.77E-1554110IPR009057Homeodomain-like
PROSITE profilePS5129413.35855109IPR017930Myb domain
TIGRFAMsTIGR015576.6E-1758107IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.1E-558110IPR009057Homeodomain-like
SMARTSM007171.3E-959107IPR001005SANT/Myb domain
PfamPF002494.8E-1060104IPR001005SANT/Myb domain
CDDcd001671.49E-762105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MVSRNMNPAD GSFLDPKGTM AVPAIGPFST STSSTAVDAT TSEEDLSKKI RKPYTITKSR  60
ESWTEPEHDK FLEALHLFDR DWKKIEAFIG SKSVIQIRSH AQKYFLKVQK SGTGEHLPPP  120
RPKRKAAHPY PQKAHKNVQP QVPGSFKSTA EPNDPSYMFR PESSSMLMTS PPTAAAAAAP  180
WTNNVPTISF TSLPKETAGA GANNNCSSSS ENTPRPRSNK DTSVQGNLGH SLRVLPDFGQ  240
VYSFIGSVFD PYASNHLQKL KKMDPIDVDT VLLLMRNLSI NLSSTDFEDH RRLLSSYDIG  300
SETANDHGGV FKTLNKEPPE IST
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00560DAPTransfer from AT5G52660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5503030.0AY550303.1 Arabidopsis thaliana MYB transcription factor (At5g52660) mRNA, complete cds.
GenBankBT0020020.0BT002002.1 Arabidopsis thaliana putative protein (At5g52660) mRNA, complete cds.
GenBankBT0258820.0BT025882.1 Arabidopsis thaliana At5g52660 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018456301.10.0PREDICTED: protein REVEILLE 6-like isoform X1
SwissprotQ8H0W30.0RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A078IS800.0A0A078IS80_BRANA; BnaA10g28420D protein
TrEMBLA0A397XKH60.0A0A397XKH6_BRACM; Uncharacterized protein
STRINGBra003117.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12902893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.21e-165MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]