PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC87_p12
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 295aa    MW: 30914.5 Da    PI: 5.3502
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC87_p12genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.71.6e-061201551555
                HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                ri +++  L+el+P+       K +Ka++L + +eY++ Lq
  RrC87_p12 120 RIAERMKSLQELVPNT-----NKTDKASMLDEIIEYVRFLQ 155
                8999***********7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.172105154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-6116160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.15E-10119165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.86E-7119159No hitNo description
Gene3DG3DSA:4.10.280.106.1E-12120164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MENGNGEGKG EFINKNSNGF FHETMSMLSS LPPPPLTPWD SSSLPPPPPQ SLFHALTVSN  60
QFHQPQESSG PTTTGSQDGL QQAQGPVSTT SPTCGSPKSQ GCELGEARQP ILTASLSGER  120
IAERMKSLQE LVPNTNKTDK ASMLDEIIEY VRFLQLQVKV LSMSRLGSAR AAGPRLNGLT  180
SEVRGQLNAL SGPCNVINGS GNATGSSSES LRTTEQRVAK LMEEDMGSAM QYLQGKGLCL  240
MPISLATAMS SSSSNHSRGA LFNPTSNAVA AQETNVAGAA PEASSTMDDV SASKA
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009132090.11e-134PREDICTED: transcription factor bHLH82-like
SwissprotQ9LSQ31e-132BH082_ARATH; Transcription factor bHLH82
TrEMBLD7MNY81e-132D7MNY8_ARALL; Basic helix-loop-helix family protein
STRINGfgenesh1_pm.C_scaffold_80014351e-133(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115851733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.11e-122LJRHL1-like 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tam TH,Catarino B,Dolan L
    Conserved regulatory mechanism controls the development of cells with rooting functions in land plants.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(29): p. E3959-68
    [PMID:26150509]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]