 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
RrC877_p5 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
HSF |
| Protein Properties |
Length: 143aa MW: 16379.2 Da PI: 10.5496 |
| Description |
HSF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC877_p5 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HSF_DNA-bind | 43.2 | 1.1e-13 | 13 | 96 | 2 | 89 |
HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHH..HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
HSF_DNA-bind 2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpk..yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89
F +ly+i++d++ +++isws +n+nsfvv+d +++ +++L k +n+ F+ +L gFk v + ++ eF+h+ F+++
RrC877_p5 13 FYIQLYQIVDDRSSDQIISWSkTNNNSFVVWDLKRLRSNILLKssSVLGKNLPEFMAKLRSHGFKTVFKGPGE-------LEFSHDDFTRD 96
899******************9999***************9663367789******************99998.......9*******986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 143 aa
Download sequence Send
to blast |
MVCKLPAGSS SSFYIQLYQI VDDRSSDQII SWSKTNNNSF VVWDLKRLRS NILLKSSSVL 60
GKNLPEFMAK LRSHGFKTVF KGPGELEFSH DDFTRDPLMK KMMAKALSEK IESFDAQIKT 120
LKCRLKAKKA SIKVENLFQN LRI
|
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT1G77570.1 | 8e-29 | Winged helix-turn-helix transcription repressor DNA-binding |
