PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC877_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 146aa    MW: 16962.4 Da    PI: 10.3801
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC877_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF658.1e-213583250
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               +++++s + +++  R+ +i+KKA+EL +LCd+e++vi ++++g+l++++
  RrC877_p4 35 PSSSYSLAATSLNSRLLTIFKKAQELTTLCDIEACVIHYGPDGELRTWP 83
               689*********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512578130No hitNo description
SMARTSM004320.0042185IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.3494486IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-1447119IPR002100Transcription factor, MADS-box
PfamPF003198.8E-114882IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MRRERARTRE SCFENQTRKG TMPPPLSSSC SNSSPSSSYS LAATSLNSRL LTIFKKAQEL  60
TTLCDIEACV IHYGPDGELR TWPENRDKVR DLALRYIQLD EAKRRKKSLN LYEFLNKKKE  120
KKTMTNNFKK RAKKSVEELK YPVSDH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479659.16e-69PREDICTED: agamous-like MADS-box protein AGL75, partial
SwissprotQ9FIX01e-37AGL81_ARATH; Agamous-like MADS-box protein AGL81
TrEMBLA0A397ZSC14e-62A0A397ZSC1_BRACM; Uncharacterized protein
STRINGBra025607.1-P2e-58(Brassica rapa)
STRINGBra025619.1-P3e-58(Brassica rapa)
STRINGBo4g139560.12e-58(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40220.14e-31AGAMOUS-like 43
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]